ENCFF510IHL

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR779BVZ
Description: Part of ENCODE experiment ENCSR779BVZ. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 436.00 2.59 1.72 100.0 RN7SL2-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 1051.00 88.99 4.15 100.0 RGS11-208 retained intron esophagus squamous epithelium (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 46882.00 77.39 185.32 83.3 NOP56-217 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 2191.00 3.62 8.66 85.19 NOP56-217 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 5871.00 4.30 23.21 92.18 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 153.00 0.11 0.60 100.0 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 125.00 0.09 0.49 55.8 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 1376.00 1.01 5.44 100.0 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 4822.00 3.53 19.06 100.0 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 99.00 0.07 0.39 44.2 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 113120.00 82.82 447.16 95.68 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 6283.00 87.08 24.84 100.0 GNL3-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 461.00 6.39 1.82 100.0 GNL3-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 139.00 3.23 0.55 100.0 RPL5-205 retained intron esophagus squamous epithelium (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 3702.00 85.99 14.63 100.0 RPL5-205 retained intron esophagus squamous epithelium (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 662.00 4.23 2.62 100.0 ZBED9-AS1-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 2399.00 86.20 9.48 100.0 RPS3A-206 retained intron esophagus squamous epithelium (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 17510.00 98.41 69.22 100.0 COX7C-203 protein coding esophagus squamous epithelium (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 7650.89 31.26 30.24 42.28 RACK1-229 protein coding esophagus squamous epithelium (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 14078.81 57.52 55.65 67.57 RACK1-229 protein coding esophagus squamous epithelium (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 1633.00 6.67 6.46 98.85 RACK1-229 protein coding esophagus squamous epithelium (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 451.00 1.84 1.78 100.0 RACK1-229 protein coding esophagus squamous epithelium (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 76296.00 51.81 301.59 83.76 RACK1-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 67560.00 45.87 267.06 74.02 RACK1-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 128.00 2.64 0.51 100.0 RNA5SP486-201 rRNA pseudogene esophagus squamous epithelium (Tissue)