ENCFF510IHL

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR779BVZ
Description: Part of ENCODE experiment ENCSR779BVZ. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 11074.00 2.00 43.78 46.68 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 23.00 0.00 0.09 100.0 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 526.00 0.10 2.08 41.09 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 44158.00 7.98 174.55 71.04 EIF4A2-219 retained intron esophagus squamous epithelium (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 19195.00 97.07 75.88 100.0 RPS8-207 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 118.00 8.19 0.47 100.0 RPL7A-206 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 593.00 41.18 2.34 100.0 RPL7A-206 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 138.00 9.58 0.55 100.0 RPL7A-206 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 198864.00 29.92 786.10 99.28 RPL21-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 6.00 0.00 0.02 100.0 RPL21-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 4971.00 0.75 19.65 100.0 RPL21-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 915.00 0.14 3.62 100.0 RPL21-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 455426.00 68.53 1800.28 96.81 RPL21-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 620.00 43.00 2.45 100.0 GABRE-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 568.00 0.64 2.25 100.0 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 14538.00 16.41 57.47 82.95 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 732.00 0.83 2.89 100.0 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 104.00 0.12 0.41 100.0 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 93.00 0.10 0.37 100.0 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 175.00 0.20 0.69 70.28 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 63255.00 71.39 250.04 99.62 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 5552.00 58.94 21.95 77.72 RPL7A-207 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 231.00 2.45 0.91 100.0 RPL7A-207 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 203.00 2.16 0.80 100.0 RPL7A-207 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 1377.00 8.17 5.44 22.04 RN7SL2-201 misc RNA esophagus squamous epithelium (Tissue)