ENCFF495VAK

Library Details

Organism: Homo Sapiens
Biosample: Peyer's patch (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR718AXQ
Description: Part of ENCODE experiment ENCSR718AXQ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's ileum tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 1146016.00 65.76 2281.85 99.86 GAS5-230 retained intron Peyer's patch (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 478.00 0.03 0.95 100.0 GAS5-230 retained intron Peyer's patch (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 6321.00 0.36 12.59 100.0 GAS5-230 retained intron Peyer's patch (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 977.00 0.06 1.95 100.0 GAS5-230 retained intron Peyer's patch (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 427.00 0.02 0.85 100.0 GAS5-230 retained intron Peyer's patch (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 3143.00 0.18 6.26 100.0 GAS5-230 retained intron Peyer's patch (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 9.00 0.00 0.02 100.0 GAS5-230 retained intron Peyer's patch (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 317.00 0.02 0.63 100.0 GAS5-230 retained intron Peyer's patch (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 1709.00 0.10 3.40 100.0 GAS5-230 retained intron Peyer's patch (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 5707.00 0.33 11.36 85.33 GAS5-230 retained intron Peyer's patch (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 1796.00 0.10 3.58 100.0 GAS5-230 retained intron Peyer's patch (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 66.00 0.00 0.13 100.0 GAS5-230 retained intron Peyer's patch (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 71.00 0.00 0.14 100.0 GAS5-230 retained intron Peyer's patch (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 4503.00 0.26 8.97 100.0 GAS5-230 retained intron Peyer's patch (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 543931.00 31.21 1083.03 100.0 GAS5-230 retained intron Peyer's patch (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 36.00 14.81 0.07 100.0 FTX-219 lncRNA Peyer's patch (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 97.00 39.92 0.19 90.65 FTX-219 lncRNA Peyer's patch (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 57.00 0.69 0.11 43.85 CTC1-214 protein coding Peyer's patch (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 40.00 0.48 0.08 38.46 CTC1-214 protein coding Peyer's patch (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 4683.00 56.39 9.32 86.64 CTC1-214 protein coding Peyer's patch (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 64.00 0.77 0.13 61.54 CTC1-214 protein coding Peyer's patch (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 1664.00 20.04 3.31 67.51 CTC1-214 protein coding Peyer's patch (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 1.00 0.01 0.00 100.0 CTC1-214 protein coding Peyer's patch (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 311.00 3.74 0.62 100.0 CTC1-214 protein coding Peyer's patch (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 133.00 1.60 0.26 100.0 CTC1-214 protein coding Peyer's patch (Tissue)