ENCFF495VAK

Library Details

Organism: Homo Sapiens
Biosample: Peyer's patch (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR718AXQ
Description: Part of ENCODE experiment ENCSR718AXQ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's ileum tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 417.00 26.41 0.83 100.0 SCARNA4-202 scaRNA Peyer's patch (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 744.00 86.31 1.48 100.0 ENST00000625572 miRNA Peyer's patch (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 1669.00 89.63 3.32 100.0 ENST00000630615 snoRNA Peyer's patch (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 138.00 62.16 0.27 100.0 DMRT2-209 protein coding Peyer's patch (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 14.00 6.31 0.03 100.0 DMRT2-209 protein coding Peyer's patch (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 428.00 48.75 0.85 100.0 SNORD98-201 snoRNA Peyer's patch (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 206.00 23.46 0.41 100.0 SNORD98-201 snoRNA Peyer's patch (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 65731.01 76.67 130.88 78.74 MIR106AHG-201 lncRNA Peyer's patch (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 8.65 0.01 0.02 66.58 MIR106AHG-201 lncRNA Peyer's patch (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 2.56 0.00 0.01 19.66 MIR106AHG-201 lncRNA Peyer's patch (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 291.00 51.87 0.58 100.0 MEG8-222 lncRNA Peyer's patch (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 181.00 32.26 0.36 100.0 MEG8-222 lncRNA Peyer's patch (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 179.00 5.62 0.36 100.0 SNHG14-224 lncRNA Peyer's patch (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 852.00 26.75 1.70 83.12 SNHG14-224 lncRNA Peyer's patch (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 329.00 10.33 0.66 67.42 SNHG14-224 lncRNA Peyer's patch (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 1933.70 10.74 3.85 51.88 5S_rRNA.20-201 rRNA pseudogene Peyer's patch (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 518.00 22.29 1.03 100.0 HSPA9-211 retained intron Peyer's patch (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 420.00 18.07 0.84 44.68 HSPA9-211 retained intron Peyer's patch (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 1222.00 80.39 2.43 100.0 DNM3OS-205 lncRNA Peyer's patch (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 2632.00 0.15 5.24 100.0 GAS5-230 retained intron Peyer's patch (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 246.00 0.01 0.49 100.0 GAS5-230 retained intron Peyer's patch (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 2770.00 0.16 5.52 87.85 GAS5-230 retained intron Peyer's patch (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 19.00 0.00 0.04 100.0 GAS5-230 retained intron Peyer's patch (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 429.00 0.02 0.85 100.0 GAS5-230 retained intron Peyer's patch (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 1571.00 0.09 3.13 100.0 GAS5-230 retained intron Peyer's patch (Tissue)