ENCFF476IAU

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR262TBN
Description: Part of ENCODE experiment ENCSR262TBN. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 107.00 0.10 0.35 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 55975.87 51.67 184.52 54.91 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 616.00 0.57 2.03 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 371.00 0.34 1.22 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 350.00 0.32 1.15 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 10774.00 6.00 35.52 100.0 SNHG32-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 290.00 0.16 0.96 100.0 SNHG32-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 40.00 0.02 0.13 100.0 SNHG32-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 3267.00 1.82 10.77 81.86 SNHG32-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 163196.00 90.89 537.97 100.0 SNHG32-223 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 48249.00 94.44 159.05 98.18 SNHG32-227 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 965.00 1.89 3.18 100.0 SNHG32-227 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 4.00 0.01 0.01 100.0 SNHG32-227 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 6.00 0.01 0.02 100.0 SNHG32-227 lncRNA esophagus squamous epithelium (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 112.00 66.67 0.37 100.0 B4GALT1-203 nonsense mediated decay esophagus squamous epithelium (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 97.00 0.45 0.32 100.0 ENST00000722183 lncRNA esophagus squamous epithelium (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 2782.00 12.95 9.17 74.39 ENST00000722183 lncRNA esophagus squamous epithelium (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 1809.00 8.42 5.96 100.0 ENST00000722183 lncRNA esophagus squamous epithelium (Tissue)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 17.00 73.91 0.06 100.0 MIR34BHG-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 1442.00 76.18 4.75 81.75 THBS3-AS1-228 lncRNA esophagus squamous epithelium (Tissue)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 2902.00 38.80 9.57 100.0 MIR200CHG-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 2199.00 29.40 7.25 100.0 MIR200CHG-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 45890.00 88.28 151.27 100.0 SNHG16-266 lncRNA esophagus squamous epithelium (Tissue)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 1423.00 2.74 4.69 100.0 SNHG16-266 lncRNA esophagus squamous epithelium (Tissue)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 258.00 0.50 0.85 100.0 SNHG16-266 lncRNA esophagus squamous epithelium (Tissue)