ENCFF476IAU

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR262TBN
Description: Part of ENCODE experiment ENCSR262TBN. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 5051.00 91.79 16.65 100.0 HCN2-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 2.00 8.70 0.01 100.0 SLC49A4-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 7.00 1.80 0.02 100.0 ATP5MC3-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 808.00 92.66 2.66 100.0 CDC25A-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 176.00 34.44 0.58 100.0 RUNX3-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 414.00 41.44 1.36 100.0 BLOC1S4-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 2336.00 78.21 7.70 100.0 ATAD5-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 25.00 13.23 0.08 100.0 SLITRK5-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 985.00 57.10 3.25 100.0 HASPIN-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 413.00 96.50 1.36 100.0 ATG101-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 72.00 63.72 0.24 100.0 PRICKLE1-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 300.00 93.46 0.99 96.46 MIR133A2-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 133.00 57.33 0.44 100.0 PBLD-204 protein coding esophagus squamous epithelium (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 73107.00 80.22 240.99 98.86 MIRLET7BHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 13966.00 15.33 46.04 88.86 MIRLET7BHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 551.00 2.13 1.82 69.66 MIR375-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 25116.00 97.01 82.79 99.47 MIR375-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 1526.00 19.99 5.03 100.0 MIR30E-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 5704.00 74.73 18.80 100.0 MIR30E-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 341.00 48.37 1.12 100.0 MIR29A-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 178.00 91.75 0.59 100.0 MIR345-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 19884.00 99.18 65.55 100.0 MIR16-2-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 8.00 1.93 0.03 100.0 MIR340-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 383.00 92.29 1.26 100.0 MIR340-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 482.00 64.18 1.59 100.0 MIR107-201 miRNA esophagus squamous epithelium (Tissue)