ENCFF476IAU

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR262TBN
Description: Part of ENCODE experiment ENCSR262TBN. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 109.00 1.80 0.36 24.66 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 1817.00 29.98 5.99 100.0 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 152.00 2.51 0.50 100.0 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 1.00 25.00 0.00 100.0 MIR124-1HG-216 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 153.00 22.37 0.50 100.0 SNHG10-212 lncRNA esophagus squamous epithelium (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 17539.39 18.38 57.82 30.49 SNHG19-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 76757.37 80.42 253.03 82.2 SNHG19-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 2.80 0.00 0.01 93.24 SNHG19-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 1.44 0.00 0.00 72.05 SNHG19-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 8485.00 55.69 27.97 100.0 MIR222HG-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 4646.00 30.49 15.32 87.48 MIR222HG-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 353.00 2.32 1.16 100.0 MIR222HG-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 48.00 24.49 0.16 100.0 RPSA-216 retained intron esophagus squamous epithelium (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 298.00 2.52 0.98 73.95 MIR99AHG-370 lncRNA esophagus squamous epithelium (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 11067.00 93.64 36.48 98.41 MIR99AHG-370 lncRNA esophagus squamous epithelium (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 1239.00 97.56 4.08 100.0 HPS4-237 retained intron esophagus squamous epithelium (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 25.00 89.29 0.08 100.0 MEG8-253 lncRNA esophagus squamous epithelium (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 3.00 10.71 0.01 100.0 MEG9-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 10.00 35.71 0.03 100.0 MEG9-206 lncRNA esophagus squamous epithelium (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 4728.00 12.90 15.59 100.0 DNAJC5-203 nonsense mediated decay esophagus squamous epithelium (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 363.00 11.78 1.20 100.0 ENST00000707189 TEC esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 441.00 0.41 1.45 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 1073.00 0.99 3.54 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 48323.73 44.61 159.30 49.27 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 15.00 0.01 0.05 100.0 MIR17HG-214 lncRNA esophagus squamous epithelium (Tissue)