ENCFF476IAU

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR262TBN
Description: Part of ENCODE experiment ENCSR262TBN. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 1091.00 0.15 3.60 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 327921.94 43.83 1080.98 49.59 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 45.00 0.01 0.15 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 70.00 0.01 0.23 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 400458.45 53.53 1320.10 56.46 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 14255.00 1.91 46.99 83.73 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 48.00 0.01 0.16 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 3171.00 0.42 10.45 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 341.00 0.05 1.12 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 2.00 0.00 0.01 100.0 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 7875.00 1.05 25.96 93.04 SNHG5-273 lncRNA esophagus squamous epithelium (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 79.00 12.29 0.26 43.41 SNHG14-323 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 19027.00 95.22 62.72 97.89 MEG8-251 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 113.00 0.57 0.37 64.94 MEG8-251 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 75.00 0.38 0.25 41.44 MEG8-251 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 112.00 0.56 0.37 94.12 MEG8-251 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 1.00 0.01 0.00 100.0 MEG8-251 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 1204.00 74.78 3.97 91.77 SNHG14-336 lncRNA esophagus squamous epithelium (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 344.00 21.37 1.13 37.89 SNHG14-336 lncRNA esophagus squamous epithelium (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 332.00 56.27 1.09 82.38 SNHG14-341 lncRNA esophagus squamous epithelium (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 1584.00 39.39 5.22 100.0 NCL-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 139.00 32.25 0.46 100.0 FMN2-209 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 333.00 5.50 1.10 75.34 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 566.00 9.34 1.87 100.0 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 4.00 0.07 0.01 100.0 LINC02739-203 lncRNA esophagus squamous epithelium (Tissue)