ENCFF476IAU

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR262TBN
Description: Part of ENCODE experiment ENCSR262TBN. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 317.00 88.55 1.04 100.0 KRTAP19-1-201 protein coding esophagus squamous epithelium (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 138.00 41.69 0.45 100.0 MIR708-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 3.00 100.00 0.01 100.0 MIR509-3-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 14.00 100.00 0.05 100.0 MIR301B-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 91.00 22.03 0.30 71.65 RNU1-82P-201 snRNA esophagus squamous epithelium (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 2591.00 30.17 8.54 81.2 SNORD66-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 1898.00 22.10 6.26 100.0 SNORD66-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 972.00 11.32 3.20 100.0 SNORD66-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 224.00 2.61 0.74 100.0 SNORD66-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 16.00 41.03 0.05 100.0 U3.17-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 2193.00 90.06 7.23 100.0 SNORD17-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 945.00 54.78 3.12 100.0 SNORD72-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 500.00 68.03 1.65 100.0 SNORD70B-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 12513.00 78.39 41.25 84.26 RNY4P18-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 17925.00 85.42 59.09 100.0 SNORD90-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 2041.00 9.73 6.73 62.99 SNORD90-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 878.00 2.67 2.89 100.0 SNORD69-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 29364.00 89.28 96.80 100.0 SNORD69-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 583.00 1.77 1.92 100.0 SNORD69-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 740.00 2.25 2.44 100.0 SNORD69-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 1333.00 56.97 4.39 69.03 SNORD70-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 233.00 2.16 0.77 100.0 B4GALNT2-202 protein coding esophagus squamous epithelium (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 6003.00 55.68 19.79 76.51 B4GALNT2-202 protein coding esophagus squamous epithelium (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 483.00 91.13 1.59 100.0 NDE1-202 protein coding esophagus squamous epithelium (Tissue)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 7.00 87.50 0.02 100.0 MIR450B-201 miRNA esophagus squamous epithelium (Tissue)