ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 2773.00 1.55 13.79 80.31 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 172.00 0.10 0.86 37.07 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 200.00 0.11 0.99 100.0 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 292.00 0.16 1.45 62.93 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 1678.00 0.94 8.34 100.0 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 4480.00 2.50 22.28 100.0 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 154544.00 86.17 768.43 94.96 RABGGTB-213 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 571.00 6.79 2.84 100.0 GNL3-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 7280.00 86.53 36.20 100.0 GNL3-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 262.00 5.30 1.30 100.0 RPL5-205 retained intron esophagus squamous epithelium (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 4251.00 86.04 21.14 100.0 RPL5-205 retained intron esophagus squamous epithelium (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 266.00 5.30 1.32 100.0 ZBED9-AS1-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 3425.00 90.49 17.03 100.0 RPS3A-206 retained intron esophagus squamous epithelium (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 32356.00 98.96 160.88 100.0 COX7C-203 protein coding esophagus squamous epithelium (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 473.00 0.77 2.35 100.0 RACK1-229 protein coding esophagus squamous epithelium (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 2772.00 4.50 13.78 98.89 RACK1-229 protein coding esophagus squamous epithelium (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 21045.00 34.19 104.64 42.55 RACK1-229 protein coding esophagus squamous epithelium (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 33861.90 55.01 168.37 60.56 RACK1-229 protein coding esophagus squamous epithelium (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 118423.00 56.84 588.82 85.94 RACK1-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 86437.00 41.49 429.78 71.81 RACK1-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 202.00 3.71 1.00 100.0 RNA5SP486-201 rRNA pseudogene esophagus squamous epithelium (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 2937.00 91.70 14.60 100.0 SCARNA5-201 scaRNA esophagus squamous epithelium (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 2704.00 1.71 13.44 83.07 RNY4-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 172.00 0.11 0.86 100.0 RNY4-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 355.00 0.22 1.77 67.36 RNY4-201 misc RNA esophagus squamous epithelium (Tissue)