ENCFF429ILE

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR379GPS
Description: Part of ENCODE experiment ENCSR379GPS. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 355.00 26.61 1.77 100.0 RPL7A-206 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 272.00 20.39 1.35 100.0 RPL7A-206 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 933.00 0.11 4.64 100.0 RPL21-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 246982.00 28.48 1228.05 99.24 RPL21-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 6376.00 0.74 31.70 100.0 RPL21-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 607112.00 70.00 3018.69 97.14 RPL21-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 19.00 0.00 0.09 100.0 RPL21-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 504.00 42.93 2.51 100.0 GABRE-209 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 8.00 0.01 0.04 100.0 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 268.00 0.17 1.33 68.89 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 929.00 0.58 4.62 100.0 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 12712.00 7.97 63.21 92.65 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 169.00 0.11 0.84 100.0 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 79.00 0.05 0.39 100.0 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 137318.00 86.08 682.77 99.54 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 224.00 0.14 1.11 100.0 RPL13A-212 retained intron esophagus squamous epithelium (Tissue)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 1.00 0.01 0.00 100.0 RPL7A-207 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 7374.00 59.13 36.67 72.21 RPL7A-207 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 217.00 1.74 1.08 100.0 RPL7A-207 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 142.00 1.14 0.71 100.0 RPL7A-207 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 103.00 1.69 0.51 100.0 RN7SL2-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 211.00 3.45 1.05 9.56 RN7SL2-201 misc RNA esophagus squamous epithelium (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 218.00 86.17 1.08 100.0 RGS11-208 retained intron esophagus squamous epithelium (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 1850.00 6.86 9.20 90.11 NOP56-217 protein coding CDS not defined esophagus squamous epithelium (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 20686.00 76.74 102.86 87.3 NOP56-217 protein coding CDS not defined esophagus squamous epithelium (Tissue)