ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 960.00 42.31 4.34 100.0 RPL7A-207 protein coding CDS not defined stomach (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 616.00 85.08 2.79 100.0 RGS11-208 retained intron stomach (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 1191.00 66.80 5.39 88.81 NOP56-217 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 353.00 3.35 1.60 100.0 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 117.00 1.11 0.53 37.86 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 623.00 5.91 2.82 100.0 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 619.00 5.87 2.80 100.0 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 192.00 1.82 0.87 62.14 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 1097.00 10.40 4.96 88.11 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 422.00 15.68 1.91 100.0 GNL3-211 retained intron stomach (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 1763.00 65.51 7.98 100.0 GNL3-211 retained intron stomach (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 155.00 20.48 0.70 100.0 RPL5-205 retained intron stomach (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 27.00 0.55 0.12 100.0 ZBED9-AS1-201 lncRNA stomach (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 2508.00 89.67 11.35 100.0 RPS3A-206 retained intron stomach (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 12707.00 97.51 57.48 100.0 COX7C-203 protein coding stomach (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 16117.65 53.09 72.91 78.4 RACK1-229 protein coding stomach (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 3936.00 12.97 17.81 99.32 RACK1-229 protein coding stomach (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 2394.00 7.89 10.83 100.0 RACK1-229 protein coding stomach (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 5941.80 19.57 26.88 38.01 RACK1-229 protein coding stomach (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 18.00 1.83 0.08 100.0 RACK1-230 retained intron stomach (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 160.00 1.03 0.72 100.0 RNA5SP486-201 rRNA pseudogene stomach (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 3388.00 88.90 15.33 100.0 SCARNA5-201 scaRNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 2827.00 1.69 12.79 86.77 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 1010.00 0.60 4.57 100.0 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 92.00 0.05 0.42 46.0 RNY4-201 misc RNA stomach (Tissue)