ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1188.00 0.60 5.37 45.71 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 29495.00 14.87 133.43 83.15 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 292.00 0.15 1.32 60.21 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 717.00 0.36 3.24 100.0 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 5564.00 2.81 25.17 66.66 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 1776.00 0.90 8.03 100.0 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 349.00 0.18 1.58 42.35 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 3036.00 1.53 13.73 84.73 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 23438.00 11.82 106.03 82.53 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 108630.00 54.77 491.43 96.76 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 3495.00 1.76 15.81 46.18 EIF4A2-219 retained intron stomach (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 5.00 2.35 0.02 100.0 RPS8-207 protein coding CDS not defined stomach (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 92.00 19.05 0.42 100.0 RPL7A-206 protein coding CDS not defined stomach (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 83.00 17.18 0.38 100.0 RPL7A-206 protein coding CDS not defined stomach (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 62.00 12.84 0.28 100.0 RPL7A-206 protein coding CDS not defined stomach (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 1162.00 1.27 5.26 100.0 RPL21-209 retained intron stomach (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 82053.00 89.40 371.20 96.66 RPL21-209 retained intron stomach (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 94.00 0.10 0.43 100.0 RPL21-209 retained intron stomach (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 5332.00 5.81 24.12 94.81 RPL21-209 retained intron stomach (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 3.00 0.00 0.01 100.0 RPL21-209 retained intron stomach (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 32.00 12.12 0.14 100.0 GABRE-209 retained intron stomach (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 204.00 3.31 0.92 100.0 RPL13A-212 retained intron stomach (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 51.00 0.83 0.23 100.0 RPL13A-212 retained intron stomach (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 1801.00 29.21 8.15 100.0 RPL13A-212 retained intron stomach (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 960.00 42.31 4.34 100.0 RPL7A-207 protein coding CDS not defined stomach (Tissue)