ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 135.00 0.08 0.61 100.0 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 4346.00 2.60 19.66 53.21 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 201.00 0.12 0.91 100.0 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 811.00 0.48 3.67 100.0 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 67998.00 40.64 307.61 99.37 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 74321.00 44.42 336.22 99.81 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 756.00 0.45 3.42 100.0 RNY4-201 misc RNA stomach (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 814.00 0.49 3.68 76.15 RNY4-201 misc RNA stomach (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 5838.00 84.35 26.41 94.09 MIR3142HG-201 lncRNA stomach (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 3769.00 7.38 17.05 100.0 MIR151A-201 miRNA stomach (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 40595.00 79.53 183.65 87.55 MIR151A-201 miRNA stomach (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 2490.00 99.08 11.26 100.0 DENND3-221 protein coding stomach (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 242.00 0.80 1.09 100.0 WDR74-204 protein coding stomach (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 1368.00 4.55 6.19 100.0 WDR74-204 protein coding stomach (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 1022.00 3.40 4.62 68.73 WDR74-204 protein coding stomach (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 275.00 0.91 1.24 100.0 WDR74-204 protein coding stomach (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 465.00 1.55 2.10 31.27 WDR74-204 protein coding stomach (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 9456.00 31.42 42.78 69.77 WDR74-204 protein coding stomach (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 97.00 22.25 0.44 100.0 SCARNA9-201 lncRNA stomach (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 31547.00 96.21 142.71 100.0 TAF1D-215 retained intron stomach (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 11.00 1.95 0.05 100.0 HSPA8-215 retained intron stomach (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 487661.00 76.27 2206.11 78.12 ENST00000548801 lncRNA stomach (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 361.00 3.38 1.63 100.0 ENST00000554988 lncRNA stomach (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 6971.00 65.30 31.54 100.0 ENST00000554988 lncRNA stomach (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 120.00 0.37 0.54 100.0 SNHG14-220 retained intron stomach (Tissue)