ENCFF379KTQ

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR003SZJ
Description: Part of ENCODE experiment ENCSR003SZJ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 3297.00 23.75 14.92 58.89 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 2.00 0.00 0.01 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 102.00 0.00 0.46 56.98 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 12124.00 84.68 54.85 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 67.00 1.24 0.30 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 364384.00 98.24 1648.42 99.4 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 566.00 0.27 2.56 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 182605.00 87.61 826.08 97.35 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 121.00 27.50 0.55 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 1809.00 38.33 8.18 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 194.00 11.96 0.88 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 100044.00 98.81 452.59 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 1846.00 96.00 8.35 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 12256.00 32.77 55.44 63.89 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 303.00 0.81 1.37 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 11.00 0.00 0.05 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-28658237 tRNA-transcript-chr6-28658237_1_22_+ 1–22 1237.00 36.89 5.60 100.0 TRNA-TRANSCRIPT-CHR6-28658237 Ala tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-28951029 tRNA-transcript-chr6-28951029_13_32_+ 13–32 200.00 3.17 0.90 100.0 TRNA-TRANSCRIPT-CHR6-28951029 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_69_+ 1–69 11.00 0.10 0.05 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_42_+ 1–42 1279.00 11.99 5.79 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_18_+ 1–18 3056.00 28.64 13.82 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA stomach (Tissue)