ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 3154.00 41.20 9.39 100.0 SNHG14-254 lncRNA gastroesophageal sphincter (Tissue)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 2322.00 12.90 6.91 100.0 SNHG14-261 lncRNA gastroesophageal sphincter (Tissue)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 9079.00 50.46 27.03 88.7 SNHG14-261 lncRNA gastroesophageal sphincter (Tissue)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 106.00 0.75 0.32 100.0 LIMD1-AS1-204 lncRNA gastroesophageal sphincter (Tissue)
ENST00000658801.2 ENST00000658801.2_139_214_+ 139–214 1833.00 12.93 5.46 100.0 LIMD1-AS1-204 lncRNA gastroesophageal sphincter (Tissue)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 2580.00 18.20 7.68 88.17 LIMD1-AS1-204 lncRNA gastroesophageal sphincter (Tissue)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 18466.00 69.00 54.98 83.06 MIR99AHG-262 lncRNA gastroesophageal sphincter (Tissue)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 2056.00 7.68 6.12 100.0 MIR99AHG-262 lncRNA gastroesophageal sphincter (Tissue)
ENST00000660956.1 ENST00000660956.1_2_92_+ 2–92 468.00 85.09 1.39 100.0 SNHG14-270 lncRNA gastroesophageal sphincter (Tissue)
ENST00000661541.1 ENST00000661541.1_446_534_+ 446–534 463.00 0.41 1.38 100.0 SNHG14-275 lncRNA gastroesophageal sphincter (Tissue)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 49.00 52.69 0.15 98.0 MIR9-2HG-225 lncRNA gastroesophageal sphincter (Tissue)
ENST00000661815.1 ENST00000661815.1_36_69_+ 36–69 429.00 28.56 1.28 100.0 MEG8-233 lncRNA gastroesophageal sphincter (Tissue)
ENST00000661815.1 ENST00000661815.1_2_70_+ 2–70 499.00 33.22 1.49 100.0 MEG8-233 lncRNA gastroesophageal sphincter (Tissue)
ENST00000661889.1 ENST00000661889.1_1145_1233_+ 1145–1233 2609.00 2.27 7.77 100.0 SNHG14-278 lncRNA gastroesophageal sphincter (Tissue)
ENST00000661889.1 ENST00000661889.1_2_92_+ 2–92 101893.00 88.82 303.39 95.02 SNHG14-278 lncRNA gastroesophageal sphincter (Tissue)
ENST00000662228.1 ENST00000662228.1_1206_1269_+ 1206–1269 2825.00 54.06 8.41 100.0 MEG8-234 lncRNA gastroesophageal sphincter (Tissue)
ENST00000662228.1 ENST00000662228.1_1205_1272_+ 1205–1272 772.00 14.77 2.30 100.0 MEG8-234 lncRNA gastroesophageal sphincter (Tissue)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 2054.00 91.49 6.12 100.0 SNHG17-252 lncRNA gastroesophageal sphincter (Tissue)
ENST00000663945.1 ENST00000663945.1_3_89_+ 3–89 2372.00 11.69 7.06 63.37 SNHG14-288 lncRNA gastroesophageal sphincter (Tissue)
ENST00000663945.1 ENST00000663945.1_2_92_+ 2–92 16699.00 82.29 49.72 96.76 SNHG14-288 lncRNA gastroesophageal sphincter (Tissue)
ENST00000665397.1 ENST00000665397.1_2_81_+ 2–81 35.00 4.16 0.10 100.0 SNHG14-295 lncRNA gastroesophageal sphincter (Tissue)
ENST00000665787.1 ENST00000665787.1_2059_2127_+ 2059–2127 427.00 57.39 1.27 100.0 MEG8-240 lncRNA gastroesophageal sphincter (Tissue)
ENST00000666022.1 ENST00000666022.1_1_88_+ 1–88 7764.00 53.49 23.12 100.0 SNHG14-303 lncRNA gastroesophageal sphincter (Tissue)
ENST00000666663.1 ENST00000666663.1_35_81_+ 35–81 120.00 7.70 0.36 100.0 SNHG14-306 lncRNA gastroesophageal sphincter (Tissue)
ENST00000666663.1 ENST00000666663.1_59_82_+ 59–82 12.00 0.77 0.04 100.0 SNHG14-306 lncRNA gastroesophageal sphincter (Tissue)