ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000666663.1 ENST00000666663.1_2_82_+ 2–82 776.00 49.78 2.31 100.0 SNHG14-306 lncRNA gastroesophageal sphincter (Tissue)
ENST00000666663.1 ENST00000666663.1_42_82_+ 42–82 8.00 0.51 0.02 100.0 SNHG14-306 lncRNA gastroesophageal sphincter (Tissue)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 183.00 8.20 0.54 100.0 ENST00000666735 lncRNA gastroesophageal sphincter (Tissue)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 21.00 0.94 0.06 100.0 ENST00000666735 lncRNA gastroesophageal sphincter (Tissue)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 1189.00 76.96 3.54 100.0 MEG8-242 lncRNA gastroesophageal sphincter (Tissue)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 2797.02 22.92 8.33 28.25 SNHG14-312 lncRNA gastroesophageal sphincter (Tissue)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 6944.07 56.91 20.68 70.13 SNHG14-312 lncRNA gastroesophageal sphincter (Tissue)
ENST00000667814.1 ENST00000667814.1_36_68_+ 36–68 99.00 0.06 0.29 100.0 MEG8-244 lncRNA gastroesophageal sphincter (Tissue)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 448.00 0.25 1.33 100.0 MEG8-244 lncRNA gastroesophageal sphincter (Tissue)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 177529.00 98.78 528.60 99.67 MEG8-244 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 303.00 0.01 0.90 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 16.00 0.00 0.05 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 1563.00 0.07 4.65 97.26 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 2081.43 0.09 6.20 62.32 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 1139.00 0.05 3.39 87.82 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 825173.00 37.31 2457.00 99.71 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 563.00 0.03 1.68 68.57 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 20338.00 0.92 60.56 99.36 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 3125.00 0.14 9.30 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 760380.00 34.38 2264.08 99.9 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 1034.00 0.05 3.08 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 102.00 0.00 0.30 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 380.00 0.02 1.13 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 290.00 0.01 0.86 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 732.00 0.03 2.18 100.0 SNHG1-248 lncRNA gastroesophageal sphincter (Tissue)