ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 448.00 0.22 1.33 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 73904.00 35.97 220.05 84.64 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 5698.00 1.50 16.97 100.0 MIRLET7A1HG-203 lncRNA gastroesophageal sphincter (Tissue)
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 4853.00 91.69 14.45 100.0 MEG8-225 lncRNA gastroesophageal sphincter (Tissue)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 79759.00 89.78 237.49 100.0 SNHG29-232 lncRNA gastroesophageal sphincter (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 274.00 0.31 0.82 100.0 SNHG29-232 lncRNA gastroesophageal sphincter (Tissue)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 302.00 0.34 0.90 100.0 SNHG29-232 lncRNA gastroesophageal sphincter (Tissue)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 4.00 0.00 0.01 100.0 SNHG29-232 lncRNA gastroesophageal sphincter (Tissue)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 2630.00 2.96 7.83 100.0 SNHG29-232 lncRNA gastroesophageal sphincter (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 4534.00 5.10 13.50 100.0 SNHG29-232 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 435.00 0.81 1.30 100.0 SNHG14-234 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 21374.00 40.02 63.64 95.21 SNHG14-234 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 24.00 0.04 0.07 100.0 SNHG14-234 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 4461.00 8.35 13.28 100.0 SNHG14-234 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 4983.00 9.33 14.84 100.0 SNHG14-234 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 9075.00 16.99 27.02 87.32 SNHG14-234 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 901.00 3.24 2.68 8.36 ENST00000655317 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 917.00 3.30 2.73 100.0 ENST00000655317 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 17992.00 64.75 53.57 91.2 ENST00000655317 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 860.00 3.10 2.56 100.0 ENST00000655317 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 455.00 1.40 1.35 77.25 LINC01962-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 24556.00 75.67 73.12 100.0 LINC01962-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 1289.00 3.97 3.84 100.0 LINC01962-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 9449.00 39.11 28.13 88.35 SNHG14-241 lncRNA gastroesophageal sphincter (Tissue)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 19209.00 95.16 57.20 100.0 MEG8-228 lncRNA gastroesophageal sphincter (Tissue)