ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 968.00 37.64 2.88 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 805.00 9.67 2.40 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 200746.00 97.11 597.73 99.87 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 4.00 0.02 0.01 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 4424.00 24.91 13.17 77.41 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 58.00 8.31 0.17 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 53.00 3.28 0.16 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 95.00 4.24 0.28 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 7403.00 88.16 22.04 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 1259.00 96.18 3.75 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 15510.00 38.49 46.18 95.37 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 303.00 0.75 0.90 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 81.00 0.04 0.24 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-28658237 tRNA-transcript-chr6-28658237_1_22_+ 1–22 4292.00 65.28 12.78 100.0 TRNA-TRANSCRIPT-CHR6-28658237 Ala tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHR6-28951029 tRNA-transcript-chr6-28951029_13_32_+ 13–32 179.00 2.57 0.53 100.0 TRNA-TRANSCRIPT-CHR6-28951029 Lys tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_69_+ 1–69 517.00 9.29 1.54 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_42_+ 1–42 257.00 4.62 0.77 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA gastroesophageal sphincter (Tissue)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_18_+ 1–18 155.00 2.79 0.46 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA gastroesophageal sphincter (Tissue)