ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 21262.00 4.02 63.31 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 142.00 0.03 0.42 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 1391.00 0.26 4.14 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 161085.00 30.43 479.64 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 569.00 0.11 1.69 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 79.00 11.45 0.24 100.0 FTX-219 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 413.00 59.86 1.23 93.02 FTX-219 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 652.00 1.33 1.94 70.33 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 2708.00 5.52 8.06 84.44 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 20711.00 42.19 61.67 82.06 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 275.00 0.56 0.82 29.67 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 9767.00 19.89 29.08 70.38 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 7158.00 14.58 21.31 100.0 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 2563.00 5.22 7.63 100.0 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 834.00 1.70 2.48 100.0 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 3838.00 1.87 11.43 64.6 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 51914.00 25.27 154.58 91.57 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 367.00 0.18 1.09 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 5710.00 2.78 17.00 51.54 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 55.00 0.03 0.16 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 382.00 0.19 1.14 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 2489.00 1.21 7.41 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 276.00 0.13 0.82 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 298.00 0.15 0.89 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 17925.00 8.72 53.37 45.01 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)