ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 1942.00 1.32 5.78 69.41 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 1886.00 1.28 5.62 70.66 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 3743.85 4.72 11.15 49.79 5S_rRNA.20-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 240.00 3.22 0.71 100.0 HSPA9-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 3007.00 40.37 8.95 62.3 HSPA9-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 3760.00 71.71 11.20 100.0 DNM3OS-205 lncRNA gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 862.00 0.16 2.57 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 1475.00 0.28 4.39 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 492.00 0.09 1.46 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 342.00 0.06 1.02 86.36 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 8733.00 1.65 26.00 91.95 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 8.00 0.00 0.02 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 140.00 0.03 0.42 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 290.00 0.05 0.86 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 285052.00 53.85 848.76 99.85 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 305.00 0.06 0.91 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 472.00 0.09 1.41 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 445.00 0.08 1.33 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 729.00 0.14 2.17 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 180.00 0.03 0.54 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 815.00 0.15 2.43 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 7872.00 1.49 23.44 81.7 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 5171.00 0.98 15.40 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 9433.00 1.78 28.09 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 7157.00 1.35 21.31 83.94 GAS5-230 retained intron gastroesophageal sphincter (Tissue)