ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 37422.00 37.72 111.43 64.82 RACK1-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 295.00 2.27 0.88 100.0 RNA5SP486-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 2197.00 86.84 6.54 100.0 SCARNA5-201 scaRNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 12433.00 1.59 37.02 80.72 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 48912.00 6.26 145.64 66.62 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 665.00 0.09 1.98 100.0 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 106.00 0.01 0.32 100.0 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 2079.00 0.27 6.19 100.0 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 999.00 0.13 2.97 64.83 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 212108.00 27.16 631.56 98.62 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 393451.00 50.38 1171.52 99.64 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 392.00 0.05 1.17 100.0 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 2458.00 0.31 7.32 54.03 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 1028.00 0.13 3.06 100.0 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 22814.00 2.92 67.93 100.0 RNY4-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 1965.00 71.09 5.85 77.09 MIR3142HG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 8453.00 90.05 25.17 100.0 SNHG6-204 retained intron gastroesophageal sphincter (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 17941.00 72.07 53.42 90.94 MIR151A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 4758.00 19.11 14.17 100.0 MIR151A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 6464.00 99.51 19.25 100.0 DENND3-221 protein coding gastroesophageal sphincter (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 954.00 3.99 2.84 74.01 WDR74-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 393.00 1.64 1.17 100.0 WDR74-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 340.00 1.42 1.01 55.83 WDR74-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 918.00 3.84 2.73 69.92 WDR74-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 269.00 1.12 0.80 44.17 WDR74-204 protein coding gastroesophageal sphincter (Tissue)