ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 102.00 1.34 0.30 100.0 RPL7A-207 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 394.00 1.86 1.17 100.0 RN7SL2-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 276.00 1.30 0.82 3.44 RN7SL2-201 misc RNA gastroesophageal sphincter (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 1237.00 87.67 3.68 100.0 RGS11-208 retained intron gastroesophageal sphincter (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 30038.00 7.57 89.44 86.99 NOP56-217 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 300245.00 75.66 894.00 85.22 NOP56-217 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 251.00 0.13 0.75 100.0 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 20961.00 11.02 62.41 84.27 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 219.00 0.12 0.65 39.96 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 147673.00 77.61 439.70 95.19 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 329.00 0.17 0.98 60.04 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 1286.00 0.68 3.83 100.0 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 2492.00 1.31 7.42 100.0 RABGGTB-213 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 844.00 9.67 2.51 100.0 GNL3-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 7335.00 84.07 21.84 100.0 GNL3-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 2758.00 71.86 8.21 100.0 RPL5-205 retained intron gastroesophageal sphincter (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 177.00 4.61 0.53 100.0 RPL5-205 retained intron gastroesophageal sphincter (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 143.00 2.43 0.43 100.0 ZBED9-AS1-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 4173.00 92.08 12.43 100.0 RPS3A-206 retained intron gastroesophageal sphincter (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 36815.00 98.90 109.62 100.0 COX7C-203 protein coding gastroesophageal sphincter (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 6494.34 23.10 19.34 44.86 RACK1-229 protein coding gastroesophageal sphincter (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 11966.26 42.57 35.63 65.29 RACK1-229 protein coding gastroesophageal sphincter (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 5601.00 19.93 16.68 99.45 RACK1-229 protein coding gastroesophageal sphincter (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 2050.00 7.29 6.10 100.0 RACK1-229 protein coding gastroesophageal sphincter (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 37422.00 37.72 111.43 64.82 RACK1-230 retained intron gastroesophageal sphincter (Tissue)