ENCFF338AVU

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR646HQQ
Description: Part of ENCODE experiment ENCSR646HQQ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 383.00 1.60 1.14 100.0 WDR74-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 293.00 1.22 0.87 100.0 WDR74-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 1285.00 5.37 3.83 100.0 WDR74-204 protein coding gastroesophageal sphincter (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 10068.00 83.05 29.98 100.0 HSPA8-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 299.00 14.57 0.89 100.0 SCARNA9-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 70971.00 95.73 211.32 100.0 TAF1D-215 retained intron gastroesophageal sphincter (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 972.00 1.31 2.89 100.0 TAF1D-215 retained intron gastroesophageal sphincter (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 3205.00 68.29 9.54 100.0 HSPA8-215 retained intron gastroesophageal sphincter (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 54.00 1.15 0.16 100.0 HSPA8-215 retained intron gastroesophageal sphincter (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 347.00 28.84 1.03 100.0 RPS2-215 retained intron gastroesophageal sphincter (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 687229.00 76.11 2046.26 77.2 ENST00000548801 lncRNA gastroesophageal sphincter (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 955.00 23.57 2.84 100.0 ENST00000554988 lncRNA gastroesophageal sphincter (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 358.00 8.84 1.07 100.0 ENST00000554988 lncRNA gastroesophageal sphincter (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 412.00 10.17 1.23 100.0 ENST00000554988 lncRNA gastroesophageal sphincter (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 578.00 1.27 1.72 100.0 SNHG14-220 retained intron gastroesophageal sphincter (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 349.00 0.77 1.04 100.0 SNHG14-220 retained intron gastroesophageal sphincter (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 29433.00 64.81 87.64 100.0 SNHG14-220 retained intron gastroesophageal sphincter (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 13521.00 29.77 40.26 100.0 SNHG14-220 retained intron gastroesophageal sphincter (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 3906.00 99.72 11.63 100.0 TEKT4P2-201 transcribed unprocessed pseudogene gastroesophageal sphincter (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 233.00 0.34 0.69 100.0 RPL4-202 retained intron gastroesophageal sphincter (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 92.00 0.13 0.27 100.0 RPL4-202 retained intron gastroesophageal sphincter (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 570.00 0.83 1.70 100.0 RPL4-202 retained intron gastroesophageal sphincter (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 64550.00 93.48 192.20 97.16 RPL4-202 retained intron gastroesophageal sphincter (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 524.00 1.38 1.56 100.0 ENST00000563103 lncRNA gastroesophageal sphincter (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 7837.00 84.77 23.34 100.0 RPL4-207 retained intron gastroesophageal sphincter (Tissue)