ENCFF299ETH

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 3.00 0.00 0.03 100.0 RABGGTB-213 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 23.00 0.02 0.24 32.86 RABGGTB-213 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 101.00 0.09 1.05 58.72 RABGGTB-213 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 38.00 0.03 0.39 100.0 RABGGTB-213 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 528.00 5.29 5.47 100.0 GNL3-211 retained intron OCI-LY7 (Cell line)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 8569.00 85.90 88.78 100.0 GNL3-211 retained intron OCI-LY7 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 825.00 40.70 8.55 100.0 RPL5-205 retained intron OCI-LY7 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 644.00 31.77 6.67 100.0 RPL5-205 retained intron OCI-LY7 (Cell line)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 8.00 3.64 0.08 100.0 ZBED9-AS1-201 lncRNA OCI-LY7 (Cell line)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 2759.00 77.92 28.59 100.0 RPS3A-206 retained intron OCI-LY7 (Cell line)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 8487.00 96.21 87.93 100.0 COX7C-203 protein coding OCI-LY7 (Cell line)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 5.00 0.01 0.05 100.0 RACK1-229 protein coding OCI-LY7 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 33551.01 59.29 347.62 64.76 RACK1-229 protein coding OCI-LY7 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 18660.85 32.98 193.35 35.05 RACK1-229 protein coding OCI-LY7 (Cell line)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 291.00 0.51 3.02 79.95 RACK1-229 protein coding OCI-LY7 (Cell line)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 24064.00 14.12 249.33 55.22 RACK1-230 retained intron OCI-LY7 (Cell line)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 142564.00 83.67 1477.11 89.09 RACK1-230 retained intron OCI-LY7 (Cell line)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 56.00 15.43 0.58 100.0 RNA5SP486-201 rRNA pseudogene OCI-LY7 (Cell line)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 173.00 64.31 1.79 100.0 SCARNA5-201 scaRNA OCI-LY7 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 739.00 0.79 7.66 76.66 RNY4-201 misc RNA OCI-LY7 (Cell line)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 4375.00 4.67 45.33 94.92 RNY4-201 misc RNA OCI-LY7 (Cell line)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 939.00 1.00 9.73 100.0 RNY4-201 misc RNA OCI-LY7 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 564.00 0.60 5.84 84.05 RNY4-201 misc RNA OCI-LY7 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 126.00 0.13 1.31 100.0 RNY4-201 misc RNA OCI-LY7 (Cell line)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 345.00 0.37 3.57 44.63 RNY4-201 misc RNA OCI-LY7 (Cell line)