ENCFF299ETH

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 91917.00 32.73 952.36 99.15 RPL21-209 retained intron OCI-LY7 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 182961.00 65.16 1895.67 96.3 RPL21-209 retained intron OCI-LY7 (Cell line)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 36.00 0.01 0.37 100.0 RPL21-209 retained intron OCI-LY7 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 608.00 0.22 6.30 100.0 RPL21-209 retained intron OCI-LY7 (Cell line)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 170.00 0.06 1.76 100.0 RPL21-209 retained intron OCI-LY7 (Cell line)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 377.00 0.34 3.91 31.0 RPL13A-212 retained intron OCI-LY7 (Cell line)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 1602.00 1.46 16.60 100.0 RPL13A-212 retained intron OCI-LY7 (Cell line)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 69373.00 63.20 718.78 99.19 RPL13A-212 retained intron OCI-LY7 (Cell line)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 24877.00 22.66 257.75 92.67 RPL13A-212 retained intron OCI-LY7 (Cell line)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 129.00 0.12 1.34 100.0 RPL13A-212 retained intron OCI-LY7 (Cell line)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 4.00 0.00 0.04 100.0 RPL13A-212 retained intron OCI-LY7 (Cell line)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 20.00 0.02 0.21 100.0 RPL13A-212 retained intron OCI-LY7 (Cell line)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 87.00 0.08 0.90 100.0 RPL13A-212 retained intron OCI-LY7 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 32.00 0.18 0.33 100.0 RPL7A-207 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 19.00 0.11 0.20 100.0 RPL7A-207 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 2.00 0.01 0.02 100.0 RPL7A-207 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 10162.00 56.59 105.29 64.85 RPL7A-207 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 13.00 0.64 0.13 100.0 RN7SL2-201 misc RNA OCI-LY7 (Cell line)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 130.00 6.38 1.35 29.48 RN7SL2-201 misc RNA OCI-LY7 (Cell line)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 626.00 9.38 6.49 99.84 NOP56-217 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 5358.00 80.26 55.51 99.11 NOP56-217 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 47.00 0.04 0.49 67.14 RABGGTB-213 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 99879.00 89.78 1034.85 99.04 RABGGTB-213 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 101.00 0.09 1.05 58.72 RABGGTB-213 protein coding CDS not defined OCI-LY7 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 38.00 0.03 0.39 100.0 RABGGTB-213 protein coding CDS not defined OCI-LY7 (Cell line)