ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 34914.00 23.95 40.99 98.68 SNHG14-234 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 2356.00 1.49 2.77 16.58 ENST00000655317 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 29890.00 18.92 35.09 100.0 ENST00000655317 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 18121.00 11.47 21.27 76.13 ENST00000655317 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 17463.00 11.05 20.50 100.0 ENST00000655317 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 1451.00 4.22 1.70 38.33 LINC01962-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 25741.00 74.79 30.22 100.0 LINC01962-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 354.00 1.03 0.42 100.0 LINC01962-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 15027.00 24.32 17.64 97.57 SNHG14-241 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 15703.00 96.46 18.44 100.0 MEG8-228 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 4645.00 22.19 5.45 100.0 SNHG14-254 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 7808.00 9.86 9.17 100.0 SNHG14-261 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 48982.00 61.85 57.50 90.94 SNHG14-261 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 40.00 0.10 0.05 100.0 LIMD1-AS1-204 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000658801.2 ENST00000658801.2_139_214_+ 139–214 14804.00 37.83 17.38 100.0 LIMD1-AS1-204 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 4624.00 11.82 5.43 85.96 LIMD1-AS1-204 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 16728.00 90.31 19.64 94.6 MIR99AHG-262 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 23.00 0.12 0.03 100.0 MIR99AHG-262 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000660376.1 ENST00000660376.1_1_78_+ 1–78 54.00 3.47 0.06 100.0 SNHG14-266 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000660956.1 ENST00000660956.1_2_92_+ 2–92 5287.00 66.41 6.21 100.0 SNHG14-270 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000661541.1 ENST00000661541.1_446_534_+ 446–534 585.00 0.28 0.69 100.0 SNHG14-275 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 44.00 53.66 0.05 89.8 MIR9-2HG-225 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000661815.1 ENST00000661815.1_36_69_+ 36–69 62.00 17.66 0.07 100.0 MEG8-233 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000661815.1 ENST00000661815.1_2_70_+ 2–70 75.00 21.37 0.09 100.0 MEG8-233 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000661889.1 ENST00000661889.1_1145_1233_+ 1145–1233 3941.00 2.45 4.63 100.0 SNHG14-278 lncRNA smooth muscle cell (In vitro differentiated cells)