ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 44993.00 87.85 52.82 92.14 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 24.00 0.62 0.03 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 5703.00 11.74 6.70 61.79 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 2290.00 0.45 2.69 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 1980.00 0.58 2.32 61.34 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 252.00 23.64 0.30 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 3273.00 28.49 3.84 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 521293.00 93.90 612.00 97.65 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 65.00 0.06 0.08 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 7512.00 7.34 8.82 32.18 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 436.00 46.98 0.51 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 3.00 0.03 0.00 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 761.00 38.77 0.89 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 97064.00 94.28 113.95 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 2842.00 81.76 3.34 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 140622.00 71.17 165.09 94.12 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 623.00 0.32 0.73 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 1653.00 0.32 1.94 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-28658237 tRNA-transcript-chr6-28658237_1_22_+ 1–22 1769.00 49.55 2.08 100.0 TRNA-TRANSCRIPT-CHR6-28658237 Ala tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-28951029 tRNA-transcript-chr6-28951029_13_32_+ 13–32 99.00 2.46 0.12 100.0 TRNA-TRANSCRIPT-CHR6-28951029 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_69_+ 1–69 2807.00 36.45 3.30 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_42_+ 1–42 238.00 3.09 0.28 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_18_+ 1–18 38.00 0.49 0.04 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHRX-3876801 tRNA-transcript-chrX-3876801_1_55_+ 1–55 6970.00 95.61 8.18 100.0 TRNA-TRANSCRIPT-CHRX-3876801 Ile tRNA smooth muscle cell (In vitro differentiated cells)