ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000661889.1 ENST00000661889.1_2_92_+ 2–92 138840.00 86.31 163.00 97.27 SNHG14-278 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000662228.1 ENST00000662228.1_1206_1269_+ 1206–1269 391.00 19.69 0.46 100.0 MEG8-234 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000662228.1 ENST00000662228.1_1205_1272_+ 1205–1272 747.00 37.61 0.88 100.0 MEG8-234 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 10467.00 88.83 12.29 100.0 SNHG17-252 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000663945.1 ENST00000663945.1_3_89_+ 3–89 6503.00 22.94 7.63 64.81 SNHG14-288 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000663945.1 ENST00000663945.1_2_92_+ 2–92 16469.00 58.09 19.33 89.96 SNHG14-288 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000665397.1 ENST00000665397.1_2_81_+ 2–81 225.00 10.79 0.26 100.0 SNHG14-295 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000665787.1 ENST00000665787.1_2059_2127_+ 2059–2127 427.00 82.91 0.50 100.0 MEG8-240 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000666022.1 ENST00000666022.1_1_88_+ 1–88 6158.00 27.34 7.23 100.0 SNHG14-303 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000666663.1 ENST00000666663.1_35_81_+ 35–81 69.00 0.53 0.08 100.0 SNHG14-306 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000666663.1 ENST00000666663.1_59_82_+ 59–82 20.00 0.15 0.02 100.0 SNHG14-306 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000666663.1 ENST00000666663.1_2_82_+ 2–82 11104.00 85.32 13.04 99.52 SNHG14-306 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000666663.1 ENST00000666663.1_42_82_+ 42–82 31.00 0.24 0.04 100.0 SNHG14-306 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 1072.00 9.74 1.26 100.0 ENST00000666735 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 565.00 5.13 0.66 100.0 ENST00000666735 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 1568.00 73.10 1.84 100.0 MEG8-242 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 5198.75 14.70 6.10 19.51 SNHG14-312 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 21592.20 61.07 25.35 81.02 SNHG14-312 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000667788.1 ENST00000667788.1_16_92_+ 16–92 305.00 0.86 0.36 100.0 SNHG14-312 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000667814.1 ENST00000667814.1_36_68_+ 36–68 5.00 0.01 0.01 100.0 MEG8-244 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 48.00 0.11 0.06 100.0 MEG8-244 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 43337.00 97.70 50.88 99.05 MEG8-244 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 1862.00 0.03 2.19 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 114.00 0.00 0.13 100.0 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 5870.00 0.10 6.89 98.42 SNHG1-248 lncRNA smooth muscle cell (In vitro differentiated cells)