ENCFF295DXJ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 14235.00 12.53 16.71 86.9 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 5873.00 5.17 6.89 98.26 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 616.00 0.54 0.72 100.0 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 6366.00 5.60 7.47 57.34 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 30.00 0.03 0.04 100.0 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 430.00 0.38 0.50 100.0 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 2746.00 2.42 3.22 100.0 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 189.00 0.17 0.22 100.0 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 244.00 0.21 0.29 100.0 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 15985.00 14.07 18.77 50.49 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 3638.00 3.20 4.27 100.0 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 46407.00 40.84 54.48 83.53 ENST00000651540 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 21.00 0.34 0.02 100.0 MIRLET7A1HG-203 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 4261.00 87.12 5.00 100.0 MEG8-225 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 726501.00 87.41 852.91 100.0 SNHG29-232 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 367.00 0.04 0.43 100.0 SNHG29-232 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 61.00 0.01 0.07 100.0 SNHG29-232 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 22.00 0.00 0.03 100.0 SNHG29-232 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 55827.00 6.72 65.54 100.0 SNHG29-232 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 38741.00 4.66 45.48 100.0 SNHG29-232 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 623.00 0.43 0.73 100.0 SNHG14-234 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 46149.00 31.66 54.18 97.87 SNHG14-234 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 144.00 0.10 0.17 100.0 SNHG14-234 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 14171.00 9.72 16.64 100.0 SNHG14-234 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 18587.00 12.75 21.82 100.0 SNHG14-234 lncRNA smooth muscle cell (In vitro differentiated cells)