ENCFF261XRS

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR133GQJ
Description: Part of ENCODE experiment ENCSR133GQJ. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 126.00 2.74 0.61 100.0 RPL13A-212 retained intron stomach (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 432.00 9.40 2.10 100.0 RPL13A-212 retained intron stomach (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 134.00 5.95 0.65 100.0 RPL7A-207 protein coding CDS not defined stomach (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 1104.00 49.04 5.38 100.0 RPL7A-207 protein coding CDS not defined stomach (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 1176.00 92.53 5.73 100.0 RGS11-208 retained intron stomach (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 1306.00 59.55 6.36 83.18 NOP56-217 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 368.00 2.81 1.79 100.0 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 221.00 1.69 1.08 45.19 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 1009.00 7.71 4.92 100.0 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 1274.00 9.74 6.21 100.0 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 268.00 2.05 1.31 54.81 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 4010.00 30.66 19.54 85.26 RABGGTB-213 protein coding CDS not defined stomach (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 508.00 13.70 2.48 100.0 GNL3-211 retained intron stomach (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 2807.00 75.70 13.68 100.0 GNL3-211 retained intron stomach (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 160.00 35.40 0.78 100.0 RPL5-205 retained intron stomach (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 74.00 1.34 0.36 100.0 ZBED9-AS1-201 lncRNA stomach (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 2989.00 92.08 14.56 100.0 RPS3A-206 retained intron stomach (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 11764.00 98.25 57.32 100.0 COX7C-203 protein coding stomach (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 3807.00 14.96 18.55 99.58 RACK1-229 protein coding stomach (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 6144.98 24.15 29.94 46.4 RACK1-229 protein coding stomach (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 12160.25 47.80 59.25 72.36 RACK1-229 protein coding stomach (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 2034.00 7.99 9.91 100.0 RACK1-229 protein coding stomach (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 40.00 3.58 0.19 90.91 RACK1-230 retained intron stomach (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 4.00 0.36 0.02 50.0 RACK1-230 retained intron stomach (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 113.00 1.24 0.55 100.0 RNA5SP486-201 rRNA pseudogene stomach (Tissue)