ENCFF261XRS

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR133GQJ
Description: Part of ENCODE experiment ENCSR133GQJ. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 11005.00 80.95 53.62 88.91 B4GALNT2-202 protein coding stomach (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 603.00 87.26 2.94 100.0 NDE1-202 protein coding stomach (Tissue)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 97.00 31.49 0.47 100.0 MIR887-201 miRNA stomach (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 103.00 91.15 0.50 100.0 MIR889-201 miRNA stomach (Tissue)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 20.00 100.00 0.10 100.0 MIR548K-201 miRNA stomach (Tissue)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 545.00 70.50 2.66 100.0 MIR320B2-201 miRNA stomach (Tissue)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 10.00 100.00 0.05 100.0 MIR1271-201 miRNA stomach (Tissue)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 383.00 0.60 1.87 100.0 SNORD100-201 snoRNA stomach (Tissue)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 949.00 1.49 4.62 100.0 SNORD100-201 snoRNA stomach (Tissue)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 770.00 1.21 3.75 100.0 SNORD100-201 snoRNA stomach (Tissue)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 59488.00 93.38 289.85 100.0 SNORD100-201 snoRNA stomach (Tissue)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 1613.00 62.28 7.86 100.0 SNORD111B-201 snoRNA stomach (Tissue)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 230.00 2.97 1.12 100.0 RNU2-36P-201 snRNA stomach (Tissue)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 294.00 3.80 1.43 100.0 RNU2-36P-201 snRNA stomach (Tissue)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 1227.00 2.32 5.98 100.0 SNORD19C-201 snoRNA stomach (Tissue)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 50675.00 95.61 246.91 99.32 SNORD19C-201 snoRNA stomach (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 28.00 1.36 0.14 100.0 SNORD12B-201 snoRNA stomach (Tissue)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 4.00 0.19 0.02 100.0 SNORD12B-201 snoRNA stomach (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 1441.00 69.75 7.02 100.0 SNORD12B-201 snoRNA stomach (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 14.00 2.25 0.07 100.0 Y_RNA.609-201 misc RNA stomach (Tissue)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 59.00 32.42 0.29 100.0 Y_RNA.612-201 misc RNA stomach (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 238.00 15.18 1.16 100.0 SNORD71-201 snoRNA stomach (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 255.00 16.26 1.24 100.0 SNORD71-201 snoRNA stomach (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 76433.00 86.57 372.41 94.48 MIR194-2HG-201 lncRNA stomach (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 10726.00 12.15 52.26 47.21 MIR194-2HG-201 lncRNA stomach (Tissue)