ENCFF261XRS

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR133GQJ
Description: Part of ENCODE experiment ENCSR133GQJ. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 95.00 19.31 0.46 100.0 HCN2-201 protein coding stomach (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 2.00 50.00 0.01 100.0 SLC49A4-201 protein coding stomach (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 20.00 4.45 0.10 100.0 ATP5MC3-201 protein coding stomach (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 253.00 77.61 1.23 100.0 CDC25A-201 protein coding stomach (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 4740.00 89.23 23.09 100.0 RUNX3-201 protein coding stomach (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 381.00 48.97 1.86 100.0 BLOC1S4-201 protein coding stomach (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 295.00 21.80 1.44 100.0 ATAD5-201 protein coding stomach (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 119.00 9.64 0.58 100.0 SLITRK5-201 protein coding stomach (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 8.00 28.57 0.04 100.0 HASPIN-201 protein coding stomach (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 743.00 98.41 3.62 100.0 ATG101-201 protein coding stomach (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 35.00 52.24 0.17 100.0 PRICKLE1-201 protein coding stomach (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 2928.00 92.92 14.27 95.75 MIR133A2-201 miRNA stomach (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 7.00 46.67 0.03 100.0 PBLD-204 protein coding stomach (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 241527.00 85.34 1176.80 96.77 MIRLET7BHG-201 lncRNA stomach (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 22687.00 8.02 110.54 82.44 MIRLET7BHG-201 lncRNA stomach (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 6473.00 3.84 31.54 56.88 MIR375-201 miRNA stomach (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 160007.00 94.91 779.61 98.03 MIR375-201 miRNA stomach (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 5836.00 63.87 28.43 100.0 MIR30E-201 miRNA stomach (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 2788.00 30.51 13.58 100.0 MIR30E-201 miRNA stomach (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 355.00 43.77 1.73 100.0 MIR29A-201 miRNA stomach (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 87.00 79.09 0.42 100.0 MIR345-201 miRNA stomach (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 8589.00 99.03 41.85 100.0 MIR16-2-201 miRNA stomach (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 15.00 1.05 0.07 100.0 MIR340-201 miRNA stomach (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 1368.00 95.46 6.67 100.0 MIR340-201 miRNA stomach (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 955.00 56.08 4.65 100.0 MIR107-201 miRNA stomach (Tissue)