ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 36.00 0.38 0.24 100.0 LIMD1-AS1-204 lncRNA Karpas-422 (Cell line)
ENST00000658801.2 ENST00000658801.2_139_214_+ 139–214 44.00 0.46 0.29 100.0 LIMD1-AS1-204 lncRNA Karpas-422 (Cell line)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 2276.00 24.04 15.02 81.58 LIMD1-AS1-204 lncRNA Karpas-422 (Cell line)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 1.00 50.00 0.01 100.0 MIR99AHG-262 lncRNA Karpas-422 (Cell line)
ENST00000660956.1 ENST00000660956.1_2_92_+ 2–92 29.00 8.55 0.19 100.0 SNHG14-270 lncRNA Karpas-422 (Cell line)
ENST00000661541.1 ENST00000661541.1_446_534_+ 446–534 9.00 0.31 0.06 100.0 SNHG14-275 lncRNA Karpas-422 (Cell line)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 222.00 69.38 1.47 96.1 MIR9-2HG-225 lncRNA Karpas-422 (Cell line)
ENST00000661889.1 ENST00000661889.1_1145_1233_+ 1145–1233 28.00 1.26 0.18 100.0 SNHG14-278 lncRNA Karpas-422 (Cell line)
ENST00000661889.1 ENST00000661889.1_2_92_+ 2–92 5.00 0.23 0.03 83.33 SNHG14-278 lncRNA Karpas-422 (Cell line)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 5807.00 72.30 38.33 100.0 SNHG17-252 lncRNA Karpas-422 (Cell line)
ENST00000663945.1 ENST00000663945.1_3_89_+ 3–89 466.00 3.89 3.08 48.34 SNHG14-288 lncRNA Karpas-422 (Cell line)
ENST00000663945.1 ENST00000663945.1_2_92_+ 2–92 9578.00 79.94 63.23 97.56 SNHG14-288 lncRNA Karpas-422 (Cell line)
ENST00000666022.1 ENST00000666022.1_1_88_+ 1–88 1.00 0.05 0.01 100.0 SNHG14-303 lncRNA Karpas-422 (Cell line)
ENST00000666663.1 ENST00000666663.1_35_81_+ 35–81 1.00 2.56 0.01 100.0 SNHG14-306 lncRNA Karpas-422 (Cell line)
ENST00000666663.1 ENST00000666663.1_2_82_+ 2–82 3.00 7.69 0.02 100.0 SNHG14-306 lncRNA Karpas-422 (Cell line)
ENST00000666663.1 ENST00000666663.1_42_82_+ 42–82 1.00 2.56 0.01 100.0 SNHG14-306 lncRNA Karpas-422 (Cell line)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 2468.00 6.30 16.29 100.0 ENST00000666735 lncRNA Karpas-422 (Cell line)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 2128.00 5.43 14.05 100.0 ENST00000666735 lncRNA Karpas-422 (Cell line)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 98.00 6.89 0.65 42.06 SNHG14-312 lncRNA Karpas-422 (Cell line)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 134.72 9.47 0.89 57.82 SNHG14-312 lncRNA Karpas-422 (Cell line)
ENST00000667788.1 ENST00000667788.1_16_92_+ 16–92 4.00 0.28 0.03 100.0 SNHG14-312 lncRNA Karpas-422 (Cell line)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 1.00 50.00 0.01 100.0 MEG8-244 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 1032.00 0.19 6.81 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 2.00 0.00 0.01 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 3899.00 0.72 25.74 94.68 SNHG1-248 lncRNA Karpas-422 (Cell line)