ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 782.00 2.93 5.16 100.0 MIRLET7A1HG-203 lncRNA Karpas-422 (Cell line)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 324005.00 92.06 2138.82 100.0 SNHG29-232 lncRNA Karpas-422 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 29.00 0.01 0.19 100.0 SNHG29-232 lncRNA Karpas-422 (Cell line)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 117.00 0.03 0.77 100.0 SNHG29-232 lncRNA Karpas-422 (Cell line)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 4.00 0.00 0.03 100.0 SNHG29-232 lncRNA Karpas-422 (Cell line)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 19047.00 5.41 125.73 100.0 SNHG29-232 lncRNA Karpas-422 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 2572.00 0.73 16.98 100.0 SNHG29-232 lncRNA Karpas-422 (Cell line)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 1.00 0.00 0.01 100.0 SNHG29-232 lncRNA Karpas-422 (Cell line)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 86.00 1.27 0.57 100.0 SNHG14-234 lncRNA Karpas-422 (Cell line)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 1696.00 25.08 11.20 86.53 SNHG14-234 lncRNA Karpas-422 (Cell line)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 79.00 1.17 0.52 100.0 SNHG14-234 lncRNA Karpas-422 (Cell line)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 16.00 0.24 0.11 100.0 SNHG14-234 lncRNA Karpas-422 (Cell line)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 645.00 9.54 4.26 100.0 SNHG14-234 lncRNA Karpas-422 (Cell line)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 108.00 1.60 0.71 98.18 SNHG14-234 lncRNA Karpas-422 (Cell line)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 911.00 4.53 6.01 11.82 ENST00000655317 lncRNA Karpas-422 (Cell line)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 3897.00 19.38 25.72 100.0 ENST00000655317 lncRNA Karpas-422 (Cell line)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 8911.00 44.30 58.82 81.56 ENST00000655317 lncRNA Karpas-422 (Cell line)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 246.00 1.22 1.62 100.0 ENST00000655317 lncRNA Karpas-422 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 411.00 5.22 2.71 73.79 LINC01962-202 lncRNA Karpas-422 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 2948.00 37.44 19.46 100.0 LINC01962-202 lncRNA Karpas-422 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 463.00 5.88 3.06 100.0 LINC01962-202 lncRNA Karpas-422 (Cell line)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 1177.00 19.90 7.77 98.49 SNHG14-241 lncRNA Karpas-422 (Cell line)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 30.00 1.61 0.20 100.0 SNHG14-254 lncRNA Karpas-422 (Cell line)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 45.00 1.48 0.30 100.0 SNHG14-261 lncRNA Karpas-422 (Cell line)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 1094.00 35.99 7.22 80.5 SNHG14-261 lncRNA Karpas-422 (Cell line)