ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 2.00 0.19 0.01 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 954.00 12.10 6.30 67.61 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 657.00 2.58 4.34 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 595.00 0.31 3.93 32.95 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 84.00 1.27 0.55 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 139.00 6.24 0.92 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 14468.00 48.89 95.51 73.35 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 19.00 0.07 0.13 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 4285.00 15.28 28.29 65.6 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 31.00 16.40 0.20 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 41.00 3.39 0.27 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 17.00 1.21 0.11 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 576.00 59.88 3.80 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 56.00 40.88 0.37 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 16634.00 59.08 109.80 92.31 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 250.00 0.89 1.65 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 170.00 0.67 1.12 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-28658237 tRNA-transcript-chr6-28658237_1_22_+ 1–22 1066.00 49.31 7.04 100.0 TRNA-TRANSCRIPT-CHR6-28658237 Ala tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR6-28951029 tRNA-transcript-chr6-28951029_13_32_+ 13–32 64.00 0.95 0.42 100.0 TRNA-TRANSCRIPT-CHR6-28951029 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_69_+ 1–69 717.00 3.82 4.73 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_42_+ 1–42 5343.00 28.49 35.27 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_18_+ 1–18 1271.00 6.78 8.39 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHRX-3876801 tRNA-transcript-chrX-3876801_1_55_+ 1–55 9.00 29.03 0.06 100.0 TRNA-TRANSCRIPT-CHRX-3876801 Ile tRNA Karpas-422 (Cell line)