ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 400362.00 78.15 2642.87 86.06 RACK1-230 retained intron Karpas-422 (Cell line)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 294.00 7.74 1.94 100.0 RNA5SP486-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 1084.00 77.87 7.16 100.0 SCARNA5-201 scaRNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 927.00 0.38 6.12 27.35 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 5236.00 2.16 34.56 66.55 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 540.00 0.22 3.56 100.0 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 31665.00 13.05 209.03 100.0 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 9505.00 3.92 62.74 70.43 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 4135.00 1.70 27.30 100.0 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 453.00 0.19 2.99 100.0 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 3020.00 1.25 19.94 100.0 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 93050.00 38.36 614.24 97.25 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 6432.00 2.65 42.46 71.15 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 20.00 0.01 0.13 100.0 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 8853.00 3.65 58.44 83.15 RNY4-201 misc RNA Karpas-422 (Cell line)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 37.00 88.10 0.24 94.87 MIR3142HG-201 lncRNA Karpas-422 (Cell line)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 605.00 67.45 3.99 100.0 SNHG6-204 retained intron Karpas-422 (Cell line)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 13296.00 38.17 87.77 100.0 MIR151A-201 miRNA Karpas-422 (Cell line)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 18529.00 53.19 122.31 88.99 MIR151A-201 miRNA Karpas-422 (Cell line)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 992.00 93.06 6.55 100.0 DENND3-221 protein coding Karpas-422 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 690.00 0.23 4.55 95.17 WDR74-204 protein coding Karpas-422 (Cell line)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 6.00 0.00 0.04 100.0 WDR74-204 protein coding Karpas-422 (Cell line)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 38.00 0.01 0.25 69.09 WDR74-204 protein coding Karpas-422 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 3462.00 1.16 22.85 77.31 WDR74-204 protein coding Karpas-422 (Cell line)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 17.00 0.01 0.11 30.91 WDR74-204 protein coding Karpas-422 (Cell line)