ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 127.00 0.78 0.84 100.0 RN7SL2-201 misc RNA Karpas-422 (Cell line)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 491.00 3.03 3.24 7.82 RN7SL2-201 misc RNA Karpas-422 (Cell line)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 5.00 33.33 0.03 100.0 RGS11-208 retained intron Karpas-422 (Cell line)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 316.00 5.12 2.09 98.75 NOP56-217 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 4812.00 77.94 31.76 97.84 NOP56-217 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 270.00 0.14 1.78 100.0 RABGGTB-213 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 4455.00 2.38 29.41 100.0 RABGGTB-213 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 3.00 0.00 0.02 100.0 RABGGTB-213 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 6197.00 3.31 40.91 100.0 RABGGTB-213 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 146.00 0.08 0.96 65.77 RABGGTB-213 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 158853.00 84.85 1048.62 98.73 RABGGTB-213 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 460.00 0.25 3.04 66.76 RABGGTB-213 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 76.00 0.04 0.50 34.23 RABGGTB-213 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 15622.00 82.71 103.12 100.0 GNL3-211 retained intron Karpas-422 (Cell line)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 1070.00 5.66 7.06 100.0 GNL3-211 retained intron Karpas-422 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 1543.00 48.35 10.19 100.0 RPL5-205 retained intron Karpas-422 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 780.00 24.44 5.15 100.0 RPL5-205 retained intron Karpas-422 (Cell line)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 304.00 11.60 2.01 100.0 ZBED9-AS1-201 lncRNA Karpas-422 (Cell line)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 7879.00 78.15 52.01 100.0 RPS3A-206 retained intron Karpas-422 (Cell line)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 32426.00 96.86 214.05 100.0 COX7C-203 protein coding Karpas-422 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 78706.14 54.17 519.56 58.5 RACK1-229 protein coding Karpas-422 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 62764.45 43.19 414.32 44.94 RACK1-229 protein coding Karpas-422 (Cell line)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 552.00 0.38 3.64 64.71 RACK1-229 protein coding Karpas-422 (Cell line)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 12.00 0.01 0.08 100.0 RACK1-229 protein coding Karpas-422 (Cell line)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 400362.00 78.15 2642.87 86.06 RACK1-230 retained intron Karpas-422 (Cell line)