ENCFF226BCZ

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 3.00 2.63 0.02 100.0 HCN2-201 protein coding Karpas-422 (Cell line)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 4080.00 44.72 26.93 100.0 ATP5MC3-201 protein coding Karpas-422 (Cell line)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 288.00 88.07 1.90 100.0 CDC25A-201 protein coding Karpas-422 (Cell line)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 9.00 3.67 0.06 100.0 RUNX3-201 protein coding Karpas-422 (Cell line)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 351.00 67.76 2.32 100.0 BLOC1S4-201 protein coding Karpas-422 (Cell line)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 998.00 32.03 6.59 100.0 ATAD5-201 protein coding Karpas-422 (Cell line)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 90.00 3.37 0.59 100.0 SLITRK5-201 protein coding Karpas-422 (Cell line)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 22.00 27.85 0.15 100.0 HASPIN-201 protein coding Karpas-422 (Cell line)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 23.00 10.31 0.15 100.0 PRR14L-201 protein coding Karpas-422 (Cell line)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 625.00 94.70 4.13 100.0 ATG101-201 protein coding Karpas-422 (Cell line)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 25.00 20.83 0.17 100.0 PRICKLE1-201 protein coding Karpas-422 (Cell line)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 32.00 40.00 0.21 100.0 PBLD-204 protein coding Karpas-422 (Cell line)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 13502.00 92.79 89.13 98.73 MIRLET7BHG-201 lncRNA Karpas-422 (Cell line)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 479.00 3.29 3.16 94.48 MIRLET7BHG-201 lncRNA Karpas-422 (Cell line)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 1.00 7.69 0.01 100.0 MIR375-201 miRNA Karpas-422 (Cell line)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 12.00 92.31 0.08 100.0 MIR375-201 miRNA Karpas-422 (Cell line)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 2708.00 8.41 17.88 100.0 MIR30E-201 miRNA Karpas-422 (Cell line)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 28662.00 89.06 189.20 100.0 MIR30E-201 miRNA Karpas-422 (Cell line)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 829.00 56.82 5.47 100.0 MIR29A-201 miRNA Karpas-422 (Cell line)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 180.00 91.84 1.19 100.0 MIR345-201 miRNA Karpas-422 (Cell line)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 63887.00 99.20 421.73 100.0 MIR16-2-201 miRNA Karpas-422 (Cell line)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 1976.00 75.56 13.04 100.0 MIR107-201 miRNA Karpas-422 (Cell line)
ENST00000362154.1 ENST00000362154.1_48_70_+ 48–70 11850.00 85.01 78.22 90.39 MIR103A2-201 miRNA Karpas-422 (Cell line)
ENST00000362162.1 ENST00000362162.1_14_35_+ 14–35 2349.00 49.26 15.51 100.0 MIR425-201 miRNA Karpas-422 (Cell line)
ENST00000362162.1 ENST00000362162.1_14_38_+ 14–38 935.00 19.61 6.17 100.0 MIR425-201 miRNA Karpas-422 (Cell line)