ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 651.00 1.04 0.49 100.0 SNHG16-266 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 298.00 0.47 0.22 100.0 SNHG16-266 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 165.00 0.26 0.12 100.0 SNHG16-266 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000741826.1 ENST00000741826.1_184_205_+ 184–205 33.00 53.23 0.02 100.0 MEG8-261 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 283.00 21.72 0.21 100.0 NR2F2-AS1-327 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 678.00 2.29 0.51 42.56 ENST00000747675 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 10228.00 34.58 7.62 100.0 ENST00000747675 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 487.00 1.65 0.36 41.8 ENST00000747675 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 428.00 1.45 0.32 38.7 ENST00000747675 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 2233.00 7.55 1.66 100.0 ENST00000747675 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 14050.00 17.02 10.47 85.57 SNHG26-250 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 51723.00 62.66 38.55 93.53 SNHG26-250 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000752259.1 ENST00000752259.1_405_425_+ 405–425 282.00 13.20 0.21 100.0 LINC02422-207 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000753088.1 ENST00000753088.1_508_523_+ 508–523 168.00 1.23 0.13 100.0 ENST00000753088 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000753088.1 ENST00000753088.1_508_542_+ 508–542 160.00 1.17 0.12 100.0 ENST00000753088 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000756336.1 ENST00000756336.1_98_127_+ 98–127 12643.40 20.77 9.42 75.27 ENST00000756336 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000756336.1 ENST00000756336.1_133_172_+ 133–172 3536.00 5.81 2.64 100.0 ENST00000756336 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000756336.1 ENST00000756336.1_117_172_+ 117–172 1150.00 1.89 0.86 100.0 ENST00000756336 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000756336.1 ENST00000756336.1_137_172_+ 137–172 2535.00 4.16 1.89 100.0 ENST00000756336 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000756336.1 ENST00000756336.1_98_132_+ 98–132 2400.17 3.94 1.79 16.88 ENST00000756336 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000756336.1 ENST00000756336.1_98_130_+ 98–130 13213.02 21.71 9.85 85.6 ENST00000756336 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000756336.1 ENST00000756336.1_107_172_+ 107–172 370.90 0.61 0.28 27.45 ENST00000756336 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000756336.1 ENST00000756336.1_98_125_+ 98–125 9233.14 15.17 6.88 61.06 ENST00000756336 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000756336.1 ENST00000756336.1_98_172_+ 98–172 1909.00 3.14 1.42 100.0 ENST00000756336 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000756336.1 ENST00000756336.1_109_172_+ 109–172 1674.53 2.75 1.25 83.06 ENST00000756336 lncRNA smooth muscle cell (In vitro differentiated cells)