ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000756452.1 ENST00000756452.1_116_129_+ 116–129 24.00 14.55 0.02 100.0 ENST00000756452 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000760093.1 ENST00000760093.1_80_108_+ 80–108 996.00 23.51 0.74 100.0 ENST00000760093 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000760093.1 ENST00000760093.1_77_108_+ 77–108 312.00 7.36 0.23 100.0 ENST00000760093 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000760397.1 ENST00000760397.1_331_421_+ 331–421 280704.00 92.22 209.22 96.97 SNHG14-356 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000762395.1 ENST00000762395.1_325_354_+ 325–354 243378.00 75.17 181.40 95.73 LINC02806-241 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000762395.1 ENST00000762395.1_325_377_+ 325–377 853.00 0.26 0.64 100.0 LINC02806-241 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000762395.1 ENST00000762395.1_397_430_+ 397–430 151.00 0.05 0.11 100.0 LINC02806-241 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000762395.1 ENST00000762395.1_324_357_+ 324–357 35904.00 11.09 26.76 34.19 LINC02806-241 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000766977.1 ENST00000766977.1_604_615_+ 604–615 1915.00 95.51 1.43 100.0 EHBP1-AS1-210 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000770398.1 ENST00000770398.1_425_437_+ 425–437 937.00 24.55 0.70 100.0 ENST00000770398 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000770398.1 ENST00000770398.1_481_509_+ 481–509 1124.00 29.45 0.84 100.0 ENST00000770398 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000770398.1 ENST00000770398.1_425_456_+ 425–456 107.00 2.80 0.08 100.0 ENST00000770398 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000771298.1 ENST00000771298.1_1591_1611_+ 1591–1611 200.00 0.74 0.15 100.0 ENST00000771298 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000771298.1 ENST00000771298.1_448_479_+ 448–479 83.00 0.31 0.06 100.0 ENST00000771298 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000771298.1 ENST00000771298.1_1591_1621_+ 1591–1621 15311.00 56.86 11.41 87.83 ENST00000771298 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000771298.1 ENST00000771298.1_485_522_+ 485–522 287.00 1.07 0.21 100.0 ENST00000771298 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 5307.00 54.04 3.96 100.0 ENST00000772672 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 29.00 0.30 0.02 100.0 ENST00000772672 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000772672.1 ENST00000772672.1_91_113_+ 91–113 268.00 2.73 0.20 100.0 ENST00000772672 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000773843.1 ENST00000773843.1_422_435_+ 422–435 350.00 29.74 0.26 100.0 ENST00000773843 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000775062.1 ENST00000775062.1_1327_1402_+ 1327–1402 169.00 0.01 0.13 100.0 SNHG12-223 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000775062.1 ENST00000775062.1_1328_1392_+ 1328–1392 1524098.00 64.62 1135.98 94.8 SNHG12-223 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000775062.1 ENST00000775062.1_1328_1395_+ 1328–1395 827478.00 35.08 616.76 97.85 SNHG12-223 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000776279.1 ENST00000776279.1_205_232_+ 205–232 13891.00 0.38 10.35 100.0 SNHG25-206 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000776279.1 ENST00000776279.1_161_234_+ 161–234 2525490.00 68.84 1882.37 69.6 SNHG25-206 lncRNA smooth muscle cell (In vitro differentiated cells)