ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 7373.00 87.66 5.50 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 151881.00 70.97 113.20 94.87 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 606.00 0.28 0.45 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 1839.00 0.15 1.37 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-28658237 tRNA-transcript-chr6-28658237_1_22_+ 1–22 3720.00 53.70 2.77 100.0 TRNA-TRANSCRIPT-CHR6-28658237 Ala tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-28951029 tRNA-transcript-chr6-28951029_13_32_+ 13–32 163.00 2.60 0.12 100.0 TRNA-TRANSCRIPT-CHR6-28951029 Lys tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_69_+ 1–69 5031.00 33.66 3.75 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_42_+ 1–42 640.00 4.28 0.48 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_18_+ 1–18 128.00 0.86 0.10 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA smooth muscle cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHRX-3876801 tRNA-transcript-chrX-3876801_1_55_+ 1–55 6227.00 95.07 4.64 100.0 TRNA-TRANSCRIPT-CHRX-3876801 Ile tRNA smooth muscle cell (In vitro differentiated cells)