ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 27.00 0.02 0.02 100.0 MIR17HG-214 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 130.00 0.08 0.10 100.0 MIR17HG-214 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 113075.13 67.28 84.28 69.65 MIR17HG-214 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 559.00 0.33 0.42 100.0 MIR17HG-214 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 53.00 0.03 0.04 100.0 MIR17HG-214 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 209.00 0.12 0.16 100.0 MIR17HG-214 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 693.00 0.41 0.52 100.0 MIR17HG-214 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 21021.00 1.69 15.67 100.0 SNHG32-223 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 1496.00 0.12 1.12 100.0 SNHG32-223 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 297.00 0.02 0.22 100.0 SNHG32-223 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 14166.00 1.14 10.56 67.34 SNHG32-223 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 1189601.00 95.89 886.67 100.0 SNHG32-223 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 184371.00 95.44 137.42 98.86 SNHG32-227 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 2365.00 1.22 1.76 100.0 SNHG32-227 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 101.00 0.05 0.08 100.0 SNHG32-227 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 94.00 0.05 0.07 100.0 SNHG32-227 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 1656.00 48.84 1.23 100.0 B4GALT1-203 nonsense mediated decay smooth muscle cell (In vitro differentiated cells)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 573.00 5.00 0.43 100.0 ENST00000722183 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 669.00 5.84 0.50 77.07 ENST00000722183 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 644.00 5.62 0.48 100.0 ENST00000722183 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 2268.00 78.26 1.69 100.0 MIR34BHG-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 13579.00 74.08 10.12 81.94 THBS3-AS1-228 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 1112.00 44.98 0.83 100.0 MIR200CHG-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 643.00 26.01 0.48 100.0 MIR200CHG-202 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 47636.00 75.86 35.51 100.0 SNHG16-266 lncRNA smooth muscle cell (In vitro differentiated cells)