ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 34078.00 86.93 25.40 100.0 GNL3-211 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 11483.00 78.58 8.56 100.0 RPL5-205 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 638.00 4.37 0.48 100.0 RPL5-205 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 13695.00 51.71 10.21 100.0 ZBED9-AS1-201 lncRNA smooth muscle cell (In vitro differentiated cells)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 9477.00 86.92 7.06 100.0 RPS3A-206 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 49131.00 98.53 36.62 100.0 COX7C-203 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 2754.00 0.96 2.05 92.85 RACK1-229 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 301.00 0.10 0.22 100.0 RACK1-229 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 175686.91 60.94 130.95 63.65 RACK1-229 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 93005.82 32.26 69.32 37.89 RACK1-229 protein coding smooth muscle cell (In vitro differentiated cells)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 203142.00 30.08 151.41 58.1 RACK1-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 460132.00 68.13 342.96 89.53 RACK1-230 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 407.00 3.15 0.30 100.0 RNA5SP486-201 rRNA pseudogene smooth muscle cell (In vitro differentiated cells)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 3297.00 85.70 2.46 100.0 SCARNA5-201 scaRNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 806.00 0.17 0.60 100.0 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 4175.00 0.87 3.11 100.0 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 175439.00 36.74 130.76 97.53 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 37219.00 7.79 27.74 92.76 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 544.00 0.11 0.41 100.0 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 27292.00 5.72 20.34 62.19 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 45322.00 9.49 33.78 86.98 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 7014.00 1.47 5.23 100.0 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 31277.00 6.55 23.31 87.57 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 4524.00 0.95 3.37 100.0 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 3465.00 0.73 2.58 40.27 RNY4-201 misc RNA smooth muscle cell (In vitro differentiated cells)