ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 412.00 34.65 0.31 100.0 GABRE-209 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 849.00 0.16 0.63 53.7 RPL13A-212 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 1129.00 0.21 0.84 100.0 RPL13A-212 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 415376.00 77.02 309.60 98.93 RPL13A-212 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 79174.00 14.68 59.01 85.3 RPL13A-212 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 652.00 0.12 0.49 100.0 RPL13A-212 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 12.00 0.00 0.01 100.0 RPL13A-212 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 262.00 0.05 0.20 100.0 RPL13A-212 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 1573.00 0.29 1.17 100.0 RPL13A-212 retained intron smooth muscle cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 122.00 0.42 0.09 100.0 RPL7A-207 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 17185.00 59.74 12.81 71.15 RPL7A-207 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 273.00 0.95 0.20 100.0 RPL7A-207 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 1059.00 1.28 0.79 20.42 RN7SL2-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 8654.00 10.48 6.45 100.0 RN7SL2-201 misc RNA smooth muscle cell (In vitro differentiated cells)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 7171.00 4.93 5.34 97.66 NOP56-217 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 116311.00 80.03 86.69 87.17 NOP56-217 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 719.00 0.11 0.54 53.3 RABGGTB-213 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 3287.00 0.50 2.45 100.0 RABGGTB-213 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 5342.00 0.81 3.98 100.0 RABGGTB-213 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 630.00 0.10 0.47 46.7 RABGGTB-213 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 463975.00 70.54 345.82 93.89 RABGGTB-213 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 114026.00 17.34 84.99 95.11 RABGGTB-213 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 470.00 0.07 0.35 100.0 RABGGTB-213 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 9.00 0.00 0.01 100.0 RABGGTB-213 protein coding CDS not defined smooth muscle cell (In vitro differentiated cells)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 34078.00 86.93 25.40 100.0 GNL3-211 retained intron smooth muscle cell (In vitro differentiated cells)