ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385025.1 ENST00000385025.1_20_41_+ 20–41 748.00 72.76 0.56 89.8 MIR532-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385045.1 ENST00000385045.1_20_41_+ 20–41 161.00 92.00 0.12 100.0 MIR15B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385050.3 ENST00000385050.3_53_74_+ 53–74 261.00 49.43 0.19 100.0 MIR542-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385051.1 ENST00000385051.1_51_71_+ 51–71 58.00 4.68 0.04 100.0 MIR500A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385051.1 ENST00000385051.1_52_74_+ 52–74 1000.00 80.65 0.75 100.0 MIR500A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385092.1 ENST00000385092.1_6_25_+ 6–25 1030.00 4.03 0.77 82.27 MIR30A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385092.1 ENST00000385092.1_6_29_+ 6–29 22384.00 87.47 16.68 99.02 MIR30A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385092.1 ENST00000385092.1_47_68_+ 47–68 1227.00 4.79 0.91 100.0 MIR30A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385092.1 ENST00000385092.1_6_21_+ 6–21 485.00 1.90 0.36 100.0 MIR30A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385129.3 ENST00000385129.3_61_80_+ 61–80 249184.00 90.90 185.73 93.93 MIR27B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385129.3 ENST00000385129.3_19_40_+ 19–40 1355.00 0.49 1.01 100.0 MIR27B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385189.3 ENST00000385189.3_25_47_+ 25–47 497.00 77.29 0.37 100.0 MIR196A2-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385196.1 ENST00000385196.1_15_36_+ 15–36 10.00 83.33 0.01 100.0 MIR577-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385199.1 ENST00000385199.1_51_70_+ 51–70 250.00 59.67 0.19 78.37 MIR654-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385200.3 ENST00000385200.3_33_54_+ 33–54 197.00 82.08 0.15 85.65 MIR204-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385212.3 ENST00000385212.3_54_76_+ 54–76 6407.00 91.29 4.78 100.0 MIR152-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385219.1 ENST00000385219.1_23_45_+ 23–45 2.00 100.00 0.00 100.0 MIR138-1-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385227.1 ENST00000385227.1_17_40_+ 17–40 2119.00 87.56 1.58 100.0 MIR30C1-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385235.3 ENST00000385235.3_16_37_+ 16–37 113.00 77.40 0.08 100.0 MIR660-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385236.1 ENST00000385236.1_55_76_+ 55–76 7243.00 18.22 5.40 100.0 MIR125B1-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385236.1 ENST00000385236.1_15_37_+ 15–37 27387.00 68.89 20.41 92.67 MIR125B1-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385254.3 ENST00000385254.3_57_78_+ 57–78 1.00 8.33 0.00 100.0 MIR493-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385254.3 ENST00000385254.3_16_37_+ 16–37 4.00 33.33 0.00 100.0 MIR493-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385255.3 ENST00000385255.3_23_44_+ 23–44 17164.51 20.20 12.79 24.77 MIR182-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385255.3 ENST00000385255.3_23_46_+ 23–46 61886.26 72.83 46.13 76.79 MIR182-201 miRNA smooth muscle cell (In vitro differentiated cells)