ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385259.1 ENST00000385259.1_13_34_+ 13–34 38013.00 95.11 28.33 96.41 MIR100-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 3513.00 94.38 2.62 100.0 MIR301A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385274.1 ENST00000385274.1_55_77_+ 55–77 4463.00 33.27 3.33 67.34 MIR130A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 8835.00 65.86 6.59 78.27 MIR130A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 4806.00 97.56 3.58 99.73 MIRLET7F2-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 62.00 72.09 0.05 100.0 MIR652-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385279.1 ENST00000385279.1_16_37_+ 16–37 4.00 66.67 0.00 100.0 MIR653-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 972.00 79.61 0.72 100.0 MIR140-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 74.00 16.26 0.06 79.57 MIR106B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 80.00 17.58 0.06 100.0 MIR106B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 287003.00 42.72 213.92 97.31 SNORD83A-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 366299.00 54.52 273.02 97.65 SNORD83A-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 25510.00 77.69 19.01 100.0 SNORD41-201 snoRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 13.00 1.05 0.01 48.15 MT-TF-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387314.1 ENST00000387314.1_41_56_+ 41–56 71.00 5.72 0.05 52.59 MT-TF-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387314.1 ENST00000387314.1_1_54_+ 1–54 53.00 4.27 0.04 100.0 MT-TF-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387342.1 ENST00000387342.1_1_53_+ 1–53 925.00 11.76 0.69 100.0 MT-TV-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_74_96_+ 74–96 24.00 0.04 0.02 100.0 MT-RNR2-201 Mt rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1500_1531_+ 1500–1531 10538.00 19.55 7.85 93.5 MT-RNR2-201 Mt rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1132_1147_+ 1132–1147 70.00 0.13 0.05 100.0 MT-RNR2-201 Mt rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1357_1376_+ 1357–1376 96.00 0.18 0.07 100.0 MT-RNR2-201 Mt rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1500_1528_+ 1500–1528 5247.00 9.73 3.91 77.83 MT-RNR2-201 Mt rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1500_1559_+ 1500–1559 1222.00 2.27 0.91 100.0 MT-RNR2-201 Mt rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1297_1329_+ 1297–1329 307.00 0.57 0.23 100.0 MT-RNR2-201 Mt rRNA smooth muscle cell (In vitro differentiated cells)
ENST00000387365.1 ENST00000387365.1_1_58_+ 1–58 2870.00 45.20 2.14 100.0 MT-TI-201 Mt tRNA smooth muscle cell (In vitro differentiated cells)