ENCFF222USQ

Library Details

Organism: Homo Sapiens
Biosample: smooth muscle cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR250STJ
Description: Part of ENCODE experiment ENCSR250STJ. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a smooth muscle pathway. They are stranded SE101 length Hi-Seq reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000384879.1 ENST00000384879.1_15_37_+ 15–37 195.00 74.71 0.15 81.93 MIR149-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384881.1 ENST00000384881.1_66_87_+ 66–87 256.00 15.28 0.19 100.0 MIR181C-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384881.1 ENST00000384881.1_27_48_+ 27–48 1224.00 73.07 0.91 90.33 MIR181C-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384892.1 ENST00000384892.1_15_36_+ 15–36 108.00 87.10 0.08 100.0 MIR194-1-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384893.1 ENST00000384893.1_52_72_+ 52–72 524.00 77.51 0.39 83.04 MIR128-2-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384906.1 ENST00000384906.1_13_34_+ 13–34 61.00 87.14 0.05 92.42 MIR99A-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384918.1 ENST00000384918.1_54_71_+ 54–71 904.00 1.63 0.67 100.0 MIR28-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384918.1 ENST00000384918.1_54_75_+ 54–75 47951.00 86.64 35.74 92.25 MIR28-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384918.1 ENST00000384918.1_14_35_+ 14–35 1698.00 3.07 1.27 94.65 MIR28-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384958.1 ENST00000384958.1_27_48_+ 27–48 3027.00 70.23 2.26 100.0 MIR183-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384967.1 ENST00000384967.1_56_76_+ 56–76 309.00 18.99 0.23 100.0 MIR145-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384967.1 ENST00000384967.1_16_38_+ 16–38 883.00 54.27 0.66 100.0 MIR145-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384988.1 ENST00000384988.1_15_36_+ 15–36 8238.00 96.52 6.14 97.8 MIR186-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384997.3 ENST00000384997.3_57_79_+ 57–79 817.00 97.03 0.61 100.0 MIR200B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000384999.1 ENST00000384999.1_25_46_+ 25–46 219.00 64.22 0.16 100.0 MIR218-1-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385004.1 ENST00000385004.1_16_38_+ 16–38 110853.00 93.40 82.62 97.59 MIR181B2-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385010.3 ENST00000385010.3_50_71_+ 50–71 6.00 66.67 0.00 100.0 MIR495-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385011.1 ENST00000385011.1_27_48_+ 27–48 29943.00 86.58 22.32 87.01 MIR10B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385018.1 ENST00000385018.1_13_34_+ 13–34 239.00 7.03 0.18 100.0 MIR130B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385018.1 ENST00000385018.1_51_73_+ 51–73 1404.41 41.33 1.05 58.27 MIR130B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385018.1 ENST00000385018.1_51_71_+ 51–71 1537.57 45.25 1.15 50.63 MIR130B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385019.1 ENST00000385019.1_6_28_+ 6–28 83188.00 57.29 62.00 100.0 MIR199A1-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385021.3 ENST00000385021.3_51_72_+ 51–72 26.00 76.47 0.02 100.0 MIR487B-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385024.1 ENST00000385024.1_11_33_+ 11–33 1585.71 59.57 1.18 62.53 MIR93-201 miRNA smooth muscle cell (In vitro differentiated cells)
ENST00000385024.1 ENST00000385024.1_11_31_+ 11–31 906.38 34.05 0.68 46.72 MIR93-201 miRNA smooth muscle cell (In vitro differentiated cells)