ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 3271.00 0.24 2.70 100.0 ZFAS1-238 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 2547.00 0.80 2.10 100.0 ZFAS1-242 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 308992.00 97.27 254.85 100.0 ZFAS1-242 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 146.00 29.44 0.12 100.0 ENST00000837997 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 154.00 31.05 0.13 100.0 ENST00000837997 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 973.00 61.78 0.80 71.91 ENST00000839036 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 447.00 35.03 0.37 100.0 ENST00000849527 lncRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 528.00 0.98 0.44 90.26 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 45032.00 83.21 37.14 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 8427.00 21.48 6.95 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 1456.00 64.48 1.20 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 32.00 1.42 0.03 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 6960.00 57.44 5.74 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 7296.00 35.30 6.02 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 180.00 21.13 0.15 77.25 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 1080.00 2.75 0.89 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-159141611 tRNA-transcript-chr1-159141611_3_20_+ 3–20 1.00 2.27 0.00 100.0 TRNA-TRANSCRIPT-CHR1-159141611 Arg tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 2692.00 5.96 2.22 86.87 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 25.00 0.06 0.02 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 20864.00 46.22 17.21 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161448951 tRNA-transcript-chr1-161448951_1_26_+ 1–26 2439.00 24.34 2.01 100.0 TRNA-TRANSCRIPT-CHR1-161448951 Leu tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_53_+ 1–53 9882.00 14.45 8.15 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_14_49_+ 14–49 7623.00 11.15 6.29 84.39 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_34_+ 21–34 54.00 0.08 0.04 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA neural progenitor cell (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_16_42_+ 16–42 302.00 0.44 0.25 84.59 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA neural progenitor cell (In vitro differentiated cells)