ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 3390.00 13.07 2.80 100.0 RN7SL2-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 1175.00 4.53 0.97 41.65 RN7SL2-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 284067.00 95.73 234.29 99.48 NOP56-217 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 1962.00 0.66 1.62 99.85 NOP56-217 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 368.00 0.06 0.30 100.0 RABGGTB-213 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 579466.00 90.46 477.92 98.53 RABGGTB-213 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 31428.00 4.91 25.92 86.29 RABGGTB-213 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 4.00 0.00 0.00 100.0 RABGGTB-213 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 32.00 0.00 0.03 18.29 RABGGTB-213 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 2750.00 0.43 2.27 100.0 RABGGTB-213 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 1779.00 0.28 1.47 100.0 RABGGTB-213 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 143.00 0.02 0.12 81.71 RABGGTB-213 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 19534.00 93.08 16.11 100.0 GNL3-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 436.00 2.08 0.36 100.0 GNL3-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 730.00 8.33 0.60 100.0 RPL5-205 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 6091.00 69.53 5.02 100.0 RPL5-205 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 17061.00 60.32 14.07 100.0 ZBED9-AS1-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 8052.00 80.80 6.64 100.0 RPS3A-206 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 45164.00 98.27 37.25 100.0 COX7C-203 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 320728.69 78.30 264.53 79.85 RACK1-229 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 60963.25 14.88 50.28 15.07 RACK1-229 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 240.00 0.06 0.20 63.32 RACK1-229 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 13.00 0.00 0.01 100.0 RACK1-229 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 69963.00 22.22 57.70 61.7 RACK1-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 237202.00 75.32 195.64 82.97 RACK1-230 retained intron neural progenitor cell (In vitro differentiated cells)